| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3206 |
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| Symbol | truD |
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| ID | 3627109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosarcina barkeri str. Fusaro |
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| Kingdom | Archaea |
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| Replicon accession | NC_007355 |
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| Strand | + |
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| Start bp | 4121622 |
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| End bp | 4122938 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637702045 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_306670 |
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| Protein GI | 73670655 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.688587 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00519063 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAGTGC CGGAAATTGA AAAACAGATC GGAATAACTC TTTACTCCAC GGATACTGAC
GGCCTCGGAG GGCAGCTTCG GCAGGAAGTG GAGGATTTTA TTGTTAAAGA AATTACAAAC
CGGGAGGAAG GACAGGAAGG GAAATACCTT ATTCTTGAAC TCATAAAGCG AGACTGGGAC
ACACATCACC TGACCCGGAC TCTTGCAAAA ATCCTCCAGG TAAGCCAGAA GCGAATCAGC
GTTGCAGGCA CAAAGGACAA GCGTGCACTT ACCACTCAGA AAATCAGTAT TTTTGACATT
GACGCCCAGA AAATTGAGAA GATCCATTTA AAAGATGTAG AGCTGAAAGT CCTTGGTCGC
TCCCGAAAAT CCGTTGAACT CGGAGACCTG TGGGGAAACA ATTTCAGAAT TACTATCCGG
AATATAACCC ACTCGAGTGA GGAGATACAC AAACTGCTCG AAAAGACCAC AAACGAGATC
CTGGCTCAGA ACGGAGTTCC GAACTTCTTC GGGATCCAGC GCTTTGGCTC GGTACGTCCT
GTCACGCATC TTGTAGGAAA AGCCATTGTT GAGGGAGATT TTGAAAAGGC TGCCCTGCTA
TATATTGCCG AACCCTTCCC TGATGAGCCA GAAGATACAC GGAAAGCCCG CCAGTTTGTT
AAAGAGACCC TCGATTTCAA AGAAGGCCTG AAAATCTATC CTCTCCACCT CGGGCATGAA
AGAGCAATGA TGAATCATCT GATCGCAAAC CCGGATGACT TTGCAGGAGC TTTTCTCGTT
CTCCCGAAAA ACCTTTACAG GATGTTTGTG CACGGCTACC AGTCCTACAT ATATAACATA
ATCCTGTGCA GGAGGATCGA AAAAGGCCTT TCCTTAAACG AGGCCGTAGA AGGTGATGTT
GTCTGTTTCA AGAATGAACA TGGCCTGCCG GATTCTTCAA AAACCGAAAA AGCCACCACA
GAAACCGTAA ATGCCATGAA CCGCCTGATT AAGAAAAAAC GGGCCTTCAT AACCGCTCCC
CTTCCGGGCC ATAATACAGA ATTTGCGTCA GGCATTCCTG GAGAGGTCGA ACAGGCAGTT
CTCGATGAAC TCAAAGTCCC TCTGCAAGGC TTCAATATAG AAGAAACTCC TGAGATGAGT
TCGAAAGGCA CCAGGCGGGA ACTCCTCCTT CAGGTTGAAC CGAAGTTTGA GGTTGCTGAA
GACGAACTGA ACCCGGGAAA GTTAAAAGCT GTGCTTGAGT TCATGCTGCC AAAGGGAAGT
TACGCAACAA CCGTGCTGCG GGAGTACATG AAGGTAGATC CTCTGCAAAT GAGTTGA
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| Protein sequence | MQVPEIEKQI GITLYSTDTD GLGGQLRQEV EDFIVKEITN REEGQEGKYL ILELIKRDWD
THHLTRTLAK ILQVSQKRIS VAGTKDKRAL TTQKISIFDI DAQKIEKIHL KDVELKVLGR
SRKSVELGDL WGNNFRITIR NITHSSEEIH KLLEKTTNEI LAQNGVPNFF GIQRFGSVRP
VTHLVGKAIV EGDFEKAALL YIAEPFPDEP EDTRKARQFV KETLDFKEGL KIYPLHLGHE
RAMMNHLIAN PDDFAGAFLV LPKNLYRMFV HGYQSYIYNI ILCRRIEKGL SLNEAVEGDV
VCFKNEHGLP DSSKTEKATT ETVNAMNRLI KKKRAFITAP LPGHNTEFAS GIPGEVEQAV
LDELKVPLQG FNIEETPEMS SKGTRRELLL QVEPKFEVAE DELNPGKLKA VLEFMLPKGS
YATTVLREYM KVDPLQMS
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