Gene Mbar_A3197 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMbar_A3197 
Symbol 
ID3627139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosarcina barkeri str. Fusaro 
KingdomArchaea 
Replicon accessionNC_007355 
Strand
Start bp4111550 
End bp4112737 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content46% 
IMG OID637702036 
ProductO-GlcNAc transferase, p110 subunit 
Protein accessionYP_306661 
Protein GI73670646 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID[TIGR02996] repeat-companion domain TIGR02996 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.187148 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.017581 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTTTG ATGCAGTTGG TGACTTCGTA TATAAAGTTA TTGGGACTAT AGGATCCGAT 
AAGAAGAATC TGCGTTCTTC GATTGATTTT GCCCTGGATC TTGCGGAAGA AAAATCGTTA
TCCCCCAATG ATTTACTTGA CCTTTCGAAT GCCTGTAAGC AGCAGAAAAT GGTTATGGAA
GAATATGTTT TCGCAAAAGC CTGTTTCATA AGAGCTTCGG GAAAGCTCCG TGAAGAAGCC
TGTTTTTCGC TGGGCACTGC CGCGCATATT TTGGGCTTTT CTCTTGAAGC TGAGGCAAGT
TATCTGGAGG CCCTAAAAGA AAATCCAGAA AATGGAGATG TAAGGTGTGC CTATGCCGAA
CTTCTTTTAG ACCTTGGAAG GACAGAGGCT GCTGATAAGG AATATAAAAA GGTACTTGAA
GCTTCTCCAG AACATGTAAA AGCGAATACA GGATATGCTT ATCTCCTGAC CGAGTACGGG
TACGTAAGAG AAGCCGAAGA GTGCTACTCA AGGGCACTTA CGGCAGATCC TGACTATGTC
CCTGCCAGAG GCGGGTACGC AAACCTGCTC TTTGATCTGG GGAGACTCAG GGACGCGGAA
AAGGAATACA AGCTTGCAAT AATACTAGAT CCTGAAGACC CAAGCCTCCA TCACAACTGT
GGAGTTTTAC TTTCTTTCCT GGGGCGCTCT TCAGAAGCCG AAGGTGAGTA CAGAAAAGCT
CTTTCTCTTA ACCCGAGACA CAGGCGGACT CTTTTTAACT ACGGAAATCT CCTTGCAAGA
GAAGGCAGAG CTTCAGAAGC CGAAGAGCAA TACACGGAAG CCCTTGCCCT TGATCAGAAT
GATGCAAAAG TTCATTCCAA TTATGCAAAT CTTCTGGCCC GCTTTGGAAG GAGATATGAA
GCTGAAATGG AATACAAGAA AGCGCTCAGT CTGGACCCCG AGAGTGCTGA AGGACATTAC
AGTTACGGCA ACCTTCTTTC GGAGATCGGG CGCCTTGGTG AAGCCCAGGA CCAGTATGAG
AAGGCTCTTG TCTTGAATCC CTATTACCCA CCTATTCACT ACAGTTACGG CCTTCTTATG
AGAAAGATGG GGCACTTTGA CGAAGCCAAA AAGGAATATA CGAAGGCCAT GCAGCTCGAT
CCGGATATCG GAAGCAAAAT GACCGAAACC TGGATTATTC TGGACTAA
 
Protein sequence
MDFDAVGDFV YKVIGTIGSD KKNLRSSIDF ALDLAEEKSL SPNDLLDLSN ACKQQKMVME 
EYVFAKACFI RASGKLREEA CFSLGTAAHI LGFSLEAEAS YLEALKENPE NGDVRCAYAE
LLLDLGRTEA ADKEYKKVLE ASPEHVKANT GYAYLLTEYG YVREAEECYS RALTADPDYV
PARGGYANLL FDLGRLRDAE KEYKLAIILD PEDPSLHHNC GVLLSFLGRS SEAEGEYRKA
LSLNPRHRRT LFNYGNLLAR EGRASEAEEQ YTEALALDQN DAKVHSNYAN LLARFGRRYE
AEMEYKKALS LDPESAEGHY SYGNLLSEIG RLGEAQDQYE KALVLNPYYP PIHYSYGLLM
RKMGHFDEAK KEYTKAMQLD PDIGSKMTET WIILD