| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2894 |
|---|
| Symbol | |
|---|
| ID | 3627789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 3709410 |
|---|
| End bp | 3710141 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637701742 |
|---|
| Product | phosphoglycolate phosphatase |
|---|
| Protein accession | YP_306372 |
|---|
| Protein GI | 73670357 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR01684] viral phosphatase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.225583 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGATG TCGAGATGGA TATGAATATA ATTCAGAAAG ATCTGGAACG AGTTTATCCC
GTAGCTCTGA AAGCCGTGCT TTTTGATATG GATAACACAC TTTTTGATTT CGTAGCCGCA
AAACTGGAAG CTTGCAGGGA GATTCTCTCT TTTATCTGGA AGAGAGATGT TACGGAAGAA
CCTTCTGAAC TTTTCAGATA TTTCCTGAGA GGAGTTTATG GTTTTGAAGA TTACGAAAAT
ATTCGAGACT ACATGCAGGA GAGAAATGTT TTTACAGCTC AGGGATACAG GAAGTGCTGT
GAGATCTATG AATGGGAAAA ACTGCAAAAT CTCGAACTCT ACCCAGCTGT ACCGGATACT
CTTGATAAGC TTAAGAAGCT GGGCTTAAAG CTTGTGATTA TAACGGATGC CGATAGCTAT
CATGCCCTGG CACGGCTTAC AAGAGTAGGG CTTCTTAATT ACTTCGATCT TATTGTGGCC
GCGGATACTA CAGGCACAAA AAAACCAGAT CCGGCACATT TTCTTTTCGC GCTTGAGACG
CTCAGGATAA AACCCGAAGA AACTCTGGTA GTGGGGGACA ATATCAAAAG AGACATAGTC
CCTGCTCGCA AACTTGGATT AAAAACCGCT TATGCTTCCT ATGGAGATTG GAGACCCGGA
GAAGAGATGG ACCAATGCTT CGATTTCAGG CTCGATACAT TTTCGGATAT GCTTGATATA
CCTGGAATCT AA
|
|---|
| Protein sequence | MEDVEMDMNI IQKDLERVYP VALKAVLFDM DNTLFDFVAA KLEACREILS FIWKRDVTEE
PSELFRYFLR GVYGFEDYEN IRDYMQERNV FTAQGYRKCC EIYEWEKLQN LELYPAVPDT
LDKLKKLGLK LVIITDADSY HALARLTRVG LLNYFDLIVA ADTTGTKKPD PAHFLFALET
LRIKPEETLV VGDNIKRDIV PARKLGLKTA YASYGDWRPG EEMDQCFDFR LDTFSDMLDI
PGI
|
|---|
| |