| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2655 |
|---|
| Symbol | |
|---|
| ID | 3626706 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 3364315 |
|---|
| End bp | 3365868 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637701511 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_306141 |
|---|
| Protein GI | 73670126 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1361] S-layer domain |
|---|
| TIGRFAM ID | [TIGR01451] conserved repeat domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0177957 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.130435 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCCG CCTGTCCAGA AAAGTATTCC TGCACCGGGA AAAAGAAGTG TAAGTTAATA
GGTCGAATGC CCGCAGACCA AAGATTGATA AATAAAATAT CGGGAGATCG AAGTTTAGTA
AATAAAACAT CGGGAGATCG AAGAGCAGTA GGTAAAATAC TGGGAAATCA AAGAACAGTA
GACAAAACAT TGAGAGATAG AAGTTCAATA GATAAAAAAC CGAAAAATCA AAGAAAAGTT
GATAAAATAC CGGAAAATCC AAGATCAATG GATAAAATGC CGGTAAATCG AAAATCGGCA
AACAAAACAC CGATAGATAA AATCTCGGCG TCATTTCTTC ATTTTGTACT TGCCTTATTG
ATGATAACCT TCTTTTTGAC AGGTCCGGCT TCTGCAGTTG TAGTGTCCGG AAACACTCAC
CTTGGAGTCG ATGTTTCGGA AATCAACCCC AATCCTGCCA GGCCGGGTGA AGACCTGCTC
ATTAAGATCA ATATCCAGAA TGCCGGAGAC GAGCCAGCAG AGAACGTGAT AGTAGGAATC
GAGGAAATTC ATCCATTCAT TTTTAAGTAT AGCACGTCAG AACTTTACGG TTCCGGAACG
AATACGGAGC GAAATTTCCA GATCGAACAG ATACGGCAGC GTTCCAAGGT CGAACTGAGT
TTCTATTTGA GAGTAGATCC TGAAGCTGAA TCGGGAATAT ATCAGCTTGA ATTCACTATC
AAAGACAAAA GCGGAACAAG TTTTTCTAAA AGAATTCCTG TTCGGGTGGA AGGAAATCCC
GACCTTGTAC TCAGCGGTAC TGAAATTCTT CCTGTAAATG AGGATAATTC CTCTTCAAGA
GCCATAGTTC CTGGACAGGA GTTCTACCTG AGGACATCAG TTAAGAATGC AGGAAGCGGG
AACGCAAAAA ATGTCAGGGT AATGCTTAAC CTCAACAATT CGTCACCTTT AATCCCGCTG
GAAGACAATG TCCATTTCTT TGAGAACCTG AGTGCAGGCA GTTCGGAAAA CCTCTCTTTC
AAACTTCTCC TGGGCAGCAA TGCCGATGTG AAGCCTTACA GGATTCCACT GCGGATAACA
GCCTCGAATA ATACGGAGAC TTTCCAGATA GACAAGATCC AGGAAATTGG AATTAACGTG
CTTAATCGAG CGCAAATTGA TATTTCAAGC CTGAAATTTG ACCCGGAGAT ACCTGTGAAA
GGGCAGCAGG CATCCCTTAC TTTAAGGCTC GAAAATGTTG GGGAAGGAGA AGCTCGCTCA
GTCAAAGCCA GGCTTGAAGG GCTTGAAGGC AGCGGAAGCA CGAGTGCTTT TCTCGGGCGC
CTGGATAAAG ACGATGACGC TCCTGCAGTT TTTACATTCA CCCCCGGAAA AACAGGTGAT
CAGAATGTGA CCCTGCTGGT AGAGTATGAG GATGATTTTG GCGAGCACCA GGTTAGCGAG
AACCTCACTT TTAATGTGAA GAGGCAGGAA GGAAGCGTTA TTCCAATTGT TCTTGGAGCC
GTACTGGTTC TTACAACTGT GATTCTTTAT ACGAAAAAGA AAGGTAAGCT CTAA
|
|---|
| Protein sequence | MKPACPEKYS CTGKKKCKLI GRMPADQRLI NKISGDRSLV NKTSGDRRAV GKILGNQRTV
DKTLRDRSSI DKKPKNQRKV DKIPENPRSM DKMPVNRKSA NKTPIDKISA SFLHFVLALL
MITFFLTGPA SAVVVSGNTH LGVDVSEINP NPARPGEDLL IKINIQNAGD EPAENVIVGI
EEIHPFIFKY STSELYGSGT NTERNFQIEQ IRQRSKVELS FYLRVDPEAE SGIYQLEFTI
KDKSGTSFSK RIPVRVEGNP DLVLSGTEIL PVNEDNSSSR AIVPGQEFYL RTSVKNAGSG
NAKNVRVMLN LNNSSPLIPL EDNVHFFENL SAGSSENLSF KLLLGSNADV KPYRIPLRIT
ASNNTETFQI DKIQEIGINV LNRAQIDISS LKFDPEIPVK GQQASLTLRL ENVGEGEARS
VKARLEGLEG SGSTSAFLGR LDKDDDAPAV FTFTPGKTGD QNVTLLVEYE DDFGEHQVSE
NLTFNVKRQE GSVIPIVLGA VLVLTTVILY TKKKGKL
|
|---|
| |