Gene Mbar_A2523 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMbar_A2523 
Symbol 
ID3625618 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosarcina barkeri str. Fusaro 
KingdomArchaea 
Replicon accessionNC_007355 
Strand
Start bp3182635 
End bp3185022 
Gene Length2388 bp 
Protein Length795 aa 
Translation table11 
GC content37% 
IMG OID637701385 
Producthypothetical protein 
Protein accessionYP_306016 
Protein GI73670001 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.184422 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.460331 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGATG TGGTAGAAGA ACTGCTGAGA ATTGTAGTTG AATCTCTACA ATATGAAGAA 
GGAAATTTAA ATGAAGCAGT TGACCTTGCA ATAAACTTTT CAACAAAAAA TTCGATCTTT
TTTGATCAGT TATTATCTTT GAGCACTTAT TGTGGATCAG AAGGGTCCTA TGAATTAGCA
TATGTATTTG CAAAGACCAC TGCAAACTTA TCAACAGGAT CTGAAAAAGC AGTTGCTCAT
CATAATGCAG GAACAGCTTC TTACTTTTTG AACCTACCTA TGGAAGCAGA AGAACATTAT
AAACTTGCTC TGCAAGCAGA CCCCAAACAT GTCAACACAC ACTCCAATTA CGGACTTCTC
CTTTCAGATA TGGGGCGCCG TGACGAAGCA GAACAGCAGT ATAAACTTGC TCTAAAATTA
GACCCCAAAC ATGTCAACAC ACACTATAAT TACGGAATTC TTCTTTATGA TATGAGGCGC
CTCGATGAGG CAGGGGAACA ATATAAACTT GCTCTTGAAT CAGAGCCCAA ACATGTAAAA
ACACACTATA ATTACGGAAA TCTCCTTTCA GATATGGGGA GCCTCGATGA GGCAGAGGAA
CAGTATAAAC TTGCTCTTGA ATCAGAGCCC AATGATGCAG ACATACACTA TAATTACGGA
CTTCTTCTTT ATAATATGGA GAGCCTCGAT GAGGCAGAGG AACAGTATAA ACTTGCTCTT
GAATCAGAGC CCAATGATGC GAGCACACAT TCAAATTATG GAATTCTCCT TTCAGATATG
GGGCGCCGTG ACGAAGCAGA GGAACAGTAT AAACTTGCTC TTGAATCAGA TCCCAAACAT
GTCAACACAC ACTATAATTA CGGAAATCTC CTTTCAGATA TGGGGCGCCT CGATGAGGCA
GAGGAACAGT ATAAACTTGC TCTTGAATCA GATCCCAAAC ATGTAAAAAC ACACTATAAT
TACGGAAATC TCCTTTCAGA TATGGGGCGT CTCGATGAGG CAGAGGAACA GTATAAACTT
GCTCTTGAAT CAGATCCCAA TGATGCGAGC ATACATTCAA ATTACGGAAT TCTCCTTTCA
GATATGGGCC GCCATGAGGA AGCAGAAGAA CAGTATAAAC TTGCTCTGGA AACAGACCCC
AATGATGCAG ACATACACTA TAACTACGGA AATCTCCTGA AACGAATGGG GCGACTCGAT
GAGGTAGAAA AACAGTATAT ACTTGCTCTG GAAGCAGACC CCAAACATGT CAACACACAC
TATAATTACG GAAAGCTCCT GGAACAAATG GGGCGACTCG ATGAGGCAGA AAAACAGTAT
AAAATAGCAA TAGGTATAGA CCCCAAAATG CCAAATAGCC ACGGTGCCTA TGGCTTACTT
TTGTTTTTCC AAGACTTAGA AGAAGAAGCT ATTAAAGAAA CAGAAGTTGC ATCCCGCTTA
TGTAGAGAAA ACGGAGATAA AGTTAAGGAA CATCTATCCT TGGCATGGCT TTATGAAAAA
TTTGCAAACA AATATTATAA TTTAAAAGAC TATAAAAAGA GTGGAGAATA TGCTGAAATT
TCAGGAGACG AATATATCGA AGCAGGTAAG CAGGCAGGAG AGAGTTTTAA GGACACTTCT
TTAACTAAAG GCTATACGCT CAAAGGAAGA GCTAAAATTC GGAAGCTTGA AATTAAAACT
CCTTTTTACA AAGACATAAT TAAAAGAATC TGGAACAAGG AATCTTACGA GATTGAAAAA
TTTACGAAAA TCATTAATTG TATTAAGGAT GCGTCAATAT GCTATGAAAA AGCAGCCAAA
GCGTCTCCAA AAGATAATCA ATTATGTAAT GCTTGTTCAA TTTCAATGTC CTGTCTTTCG
GAAATGCTCG ACTATATGTT TGCAGTTATA AAGCAGAAAA AAACACCTGA GCTTGAAGAT
AAATTGAAAA ATTGGAATGA AAAGTTGTCA ATTGCCAAAG GTGCATATCA AGAGCATAGT
AAAGGAGAAC TCTTTATCGA ATCTCTATAT AAATTAATGG GATGCATTCA GAATCTGGAC
AAATATAAAA AGTATGGAAC GAGAGAGTAT GGAAGAGCTT TTGAGGAATG TCGCAAAGAA
TTAACTGAAA TAGCAAATAA TATAGAAGGT CCTATTCAGA AAATCATTGA GAATGTAACG
AAAAAAATGG ATGTATGTCG GCTCAAACAA TTACCTTATG CAGGTACTGA GACTGGATAT
ATACCTCAAC CTAATAAATT ATCTCAATTT TTGAAATGGA TTTTAGATCC AAAAAGAATA
GGAATAGGAG TATTTGGAAT CATAATTACA GTTATTGTTA ATCATTACAA TGAATATCTT
TTTTCTTTGA TCAAAAGAAC TGTAACTATG CTTCTCAGTA AAATATAA
 
Protein sequence
MDDVVEELLR IVVESLQYEE GNLNEAVDLA INFSTKNSIF FDQLLSLSTY CGSEGSYELA 
YVFAKTTANL STGSEKAVAH HNAGTASYFL NLPMEAEEHY KLALQADPKH VNTHSNYGLL
LSDMGRRDEA EQQYKLALKL DPKHVNTHYN YGILLYDMRR LDEAGEQYKL ALESEPKHVK
THYNYGNLLS DMGSLDEAEE QYKLALESEP NDADIHYNYG LLLYNMESLD EAEEQYKLAL
ESEPNDASTH SNYGILLSDM GRRDEAEEQY KLALESDPKH VNTHYNYGNL LSDMGRLDEA
EEQYKLALES DPKHVKTHYN YGNLLSDMGR LDEAEEQYKL ALESDPNDAS IHSNYGILLS
DMGRHEEAEE QYKLALETDP NDADIHYNYG NLLKRMGRLD EVEKQYILAL EADPKHVNTH
YNYGKLLEQM GRLDEAEKQY KIAIGIDPKM PNSHGAYGLL LFFQDLEEEA IKETEVASRL
CRENGDKVKE HLSLAWLYEK FANKYYNLKD YKKSGEYAEI SGDEYIEAGK QAGESFKDTS
LTKGYTLKGR AKIRKLEIKT PFYKDIIKRI WNKESYEIEK FTKIINCIKD ASICYEKAAK
ASPKDNQLCN ACSISMSCLS EMLDYMFAVI KQKKTPELED KLKNWNEKLS IAKGAYQEHS
KGELFIESLY KLMGCIQNLD KYKKYGTREY GRAFEECRKE LTEIANNIEG PIQKIIENVT
KKMDVCRLKQ LPYAGTETGY IPQPNKLSQF LKWILDPKRI GIGVFGIIIT VIVNHYNEYL
FSLIKRTVTM LLSKI