| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2419 |
|---|
| Symbol | |
|---|
| ID | 3625460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 3055101 |
|---|
| End bp | 3055628 |
|---|
| Gene Length | 528 bp |
|---|
| Protein Length | 175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637701287 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_305919 |
|---|
| Protein GI | 73669904 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.562404 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.124361 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATGAAC CTCCTAACCA GTTTCATTGC CTTGATGCCG ATGTTTGGAT TGAGATTCCA
AATAGGGTAA TAGGCGTTAC TGGTAATTGC TATGTTGGAC GGGATTACAT CCCTAAAAAC
GGTAAAACAC GATATGATGT GAAGGTCTTC GTTAAGAAGA TCAAAAAGGA ACAAGAGAAT
CCTGATACAT TGATTAAAGA CAATGATCTA GAATTATCTA AGAGTAAGTC AGATGACATT
GGAACTTTGA TTGAGAAAGG AGTGAATCTA AGAAATTTTA AAAAATATGA CGAGGCCCTG
CAAATATTTG AGAAAGTAAC AGAACTCGAA CCCTCGAATG CACAGGCATG GCATAATAAA
GGAATTATTC TAGGAATCCT TAAGAAGTAC AATGAAGCTC GGCAAGCATT TGAGAAAGCG
ATGGAAATCG AACCGGGGAA AAACCGTAGG GATTGTAGTT CTCGTCATCT TCGTTCCGCT
CGCAATAGGA CCTCTGAAAG GAATCAGGGC AGCAACGTAG AACAGTAA
|
|---|
| Protein sequence | MYEPPNQFHC LDADVWIEIP NRVIGVTGNC YVGRDYIPKN GKTRYDVKVF VKKIKKEQEN
PDTLIKDNDL ELSKSKSDDI GTLIEKGVNL RNFKKYDEAL QIFEKVTELE PSNAQAWHNK
GIILGILKKY NEARQAFEKA MEIEPGKNRR DCSSRHLRSA RNRTSERNQG SNVEQ
|
|---|
| |