| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2410 |
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| Symbol | |
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| ID | 3626365 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosarcina barkeri str. Fusaro |
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| Kingdom | Archaea |
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| Replicon accession | NC_007355 |
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| Strand | - |
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| Start bp | 3044788 |
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| End bp | 3047103 |
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| Gene Length | 2316 bp |
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| Protein Length | 771 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637701278 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_305910 |
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| Protein GI | 73669895 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01057] DNA topoisomerase I, archaeal |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.11035 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCTTA TTGTAACGGA AAAAAATATA GCAGCAAGGA GGATAGCTGC GATTCTGGCT
CCAAAAAACC CGAAGAAAGA TAGAGTCAGT GGAGTAGACG TGTACCGGTA TGAGATTGTG
TCCGATGAAG AGAAGCAGGA AACTGTAGTT GTAGGGCTGT CGGGCCATAT CGTAGGGATC
GACTTTCCCA AGGAGTACAA TAACTGGCAG AAAGTAGAAT CTAAAACCCT TATCAATGCC
GATATTATAA CAACTCCTAT CAACCGAAAG ATCGTAACTG CACTTAAAGG CCTGGGGAAA
AAGGCGAGCA GGGTTACGAT TGCCACTGAC TACGACCGGG AAGGAGAACT CATAGGAGTC
GAGGCTCTCA ATATCATAAA ACAGGTAAAT CCGGATGTTC CTTTTGACCG GGTGCGCTAC
AGCGCAATAA CCCCAAAAGC AATAGAAGCC GCATTTTCAA ATGCAACAGA TGTTGATTTT
AATCTCGCGG ATGCCGGCCA TTCCAGGCAG GTCATTGACC TTGTCTGGGG CGCAGCCCTT
ACCCGCTATA TTTCTCTTGC TGCAGGCAGG CTTGGGAAGA TGTTTCTTTC CGTAGGCAGG
GTACAGTCGC CAACTCTTTC TCTTATTGTG GACAGGGAAA AAGAAAGGAA TGTTTTTGTC
CCGACTCCTT ACTGGGAGAT CTATGCCGAA CTTCAAAATA CAGAAGGAAA AACCTTCTCA
GCTCAGCATT CAACCCGCCG TTTTCTGGAT AAAAAGGAGG CAACAAAAGC CTTCAAAAAA
CTGGGGAAAA AGGCCGAATT AAAGGGAATC GAAAAAGGGA AAAAGACCGA CCAGCCCCCG
GCTCCTTTTA ATACCACAGG TTTCATAAGT GCAGCAAACT CAATCGGGCT CAGCCCTGCA
AACGCGATGC GCATAGCTGA AGCTCTCTAT ACTAATGGTT ATATTTCGTA CCCCAGGACT
GACAATACGG TCTATCCCGA GACCCTTGAC CTGAGGGCTC AGATTGAGAT TTTCAAAGAA
GGTCCCTTTA AAGAGTACGC AGACGCTCTG CTTGAAAAAG CTGAACTCAT TCCTACGCGG
GGAAAAAAGG AAACTACCGA CCATCCACCT ATTTTTCCGG CTTCCCTTGC AAAAGAGTCC
GACTTAAAAG AGGACGAGTG GAAGGTCTAC GAACTTGTAG TCAGGCGCTT TTTTGCGACC
TTTGCAGGGC CAAGCGAATG GGAAACTATG CGCTTGAAAC TTGACATCAA CGGAGAAGAA
TTCAAGGCAA ACGGGGCAAG GCTTGTGGAA CAGGGCTGGA GATGGTACTA TCCTTACAAT
GCGCCTGAAG ACCGGCTGTT CCCTGAACTG CATGAAGGCG ATTCCCTGAA AGTGATTAAA
AAAGATATGC AGGATAAAGA AACACAGCCT CCAGGCCGTT ATGGACAGGG AAGACTTATC
AATATTATGG AAGAGCTTGG GCTTGGAACA AAGGCAACGC GACACGAGAT AATCAGCAAG
CTTTATTCCA GGGCCTACAT TCACGGAAAC CCGGTGCAGC CTACGAATAC CTCTTTTGCA
GTAATGGATA CTCTCGAGAA GTATTCCCCT ACTATCACAA AACCAGACAT GACAAAGCTG
CTTGAAGAAA ATATGGACCG GATTGCTGAG GGCAAAATCA AAGAGGCTGC CGTTCTTGAA
GAATCGCGGG ATATGTTAAA GCAGGTCTTC TCGGAACTCG ATAAAAACCG GGAAAAAATC
GTGGAATCTC TCCAGGCAGG CCTTAGAGAA GATAAAATCA TAGGCACTTG CTCTAGCTGT
GGAAACGAAC TTATAATCCG GCGTTCGAAA AGGGGAGGCC GGTTTATAGG CTGCAACAAT
TATCCGAATT GTACCTTTTC TCTTCCTCTG CCTAGAAGTG GACAGATCAT AGTTACTGAC
AAGGTCTGTG AAGTTCACGG CCTGCACCAT ATCCGTATAA TCAACTCGGG AAAAAGGCCC
TGGGACCTTG GTTGCCCTCA GTGTAATTTC ATAGAATGGC AGAAAACCCA GCAGGAAGAA
CAGGCCCAGC AGCCTAAAAA AGAAAAGCCC AAATCAATTA AGGATCTCGA AGGCGTTGGA
AAAGCCACAG CAGGAAAACT GGAAGAAGCC GGTATTACAA GTGTAGAAGC CCTGGCAGAA
GCCGACCCTG TAGAGCTTGC AAAAGCAATA AAGACCAGTG TAAAGAGAGT CAAAAGCTGG
CAGGTTTCAT GTAACGGTAT AGTTACAGTA GAAGGCAACA GCACAGCTGA GGGCAACAGT
ACAGTTAAAG GCAACTGTAC AGTTGAAGAC GCATGA
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| Protein sequence | MHLIVTEKNI AARRIAAILA PKNPKKDRVS GVDVYRYEIV SDEEKQETVV VGLSGHIVGI
DFPKEYNNWQ KVESKTLINA DIITTPINRK IVTALKGLGK KASRVTIATD YDREGELIGV
EALNIIKQVN PDVPFDRVRY SAITPKAIEA AFSNATDVDF NLADAGHSRQ VIDLVWGAAL
TRYISLAAGR LGKMFLSVGR VQSPTLSLIV DREKERNVFV PTPYWEIYAE LQNTEGKTFS
AQHSTRRFLD KKEATKAFKK LGKKAELKGI EKGKKTDQPP APFNTTGFIS AANSIGLSPA
NAMRIAEALY TNGYISYPRT DNTVYPETLD LRAQIEIFKE GPFKEYADAL LEKAELIPTR
GKKETTDHPP IFPASLAKES DLKEDEWKVY ELVVRRFFAT FAGPSEWETM RLKLDINGEE
FKANGARLVE QGWRWYYPYN APEDRLFPEL HEGDSLKVIK KDMQDKETQP PGRYGQGRLI
NIMEELGLGT KATRHEIISK LYSRAYIHGN PVQPTNTSFA VMDTLEKYSP TITKPDMTKL
LEENMDRIAE GKIKEAAVLE ESRDMLKQVF SELDKNREKI VESLQAGLRE DKIIGTCSSC
GNELIIRRSK RGGRFIGCNN YPNCTFSLPL PRSGQIIVTD KVCEVHGLHH IRIINSGKRP
WDLGCPQCNF IEWQKTQQEE QAQQPKKEKP KSIKDLEGVG KATAGKLEEA GITSVEALAE
ADPVELAKAI KTSVKRVKSW QVSCNGIVTV EGNSTAEGNS TVKGNCTVED A
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