| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1935 |
|---|
| Symbol | |
|---|
| ID | 3626248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 2416210 |
|---|
| End bp | 2418696 |
|---|
| Gene Length | 2487 bp |
|---|
| Protein Length | 828 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637700815 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_305454 |
|---|
| Protein GI | 73669439 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.115216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATAT CCCTTGAACA CCCGGAAATG CTTTTACTCA TCATTCCTGT GACAATTGCC
GGGTTCTATC TTCTGCGGAA GACAAAAACG AAGATTGTGG AATGGAGGAT GCTTGTAGCT
TTCCTCCTTG TACTCGCTTT GGCTGCTCCA TTTACAACGG CTACACAGAC TGTTAATGAA
GACAACCCTT CACTTGTGCT AATTCAGGAT AAGACCTCAA GTATGGAGCT TTTTTCTAAT
GAAACAGGTA CTGACCTGTA TAAAGCTCTT GCAGCTGATA CCTCTACGAC CTTAGTCCAG
CTTACAGGCG ATAAAACAAA TCTTGGAGAT GCTGTGACTC AGTACTCTGG CACTGGTAAT
CAGATTGTTC TTATTACTGA CGGGAACAAT AACTCCGGGA AGAGCCTTGT TGATGCTCTC
GGATTTGCCA AAGAAACCAA TACTTCAGTC TACCTTGTCG AGCCTGAACT CAAGACAAAT
GACCTCAGTG TAGAAATTCT TGGAGATAAG AGTGTAGTAG TGGATAACCC GAACGAATTT
AAGATAATTG TCCGTCAGGC TTCAAATCAA AGTGTCAGCT ATTCCTATGA AGCATATGTA
GATGGGGAAC TTTCCCAAAG TGGCGACGTT ACTCAAAACT CAACGCAGTA TAGTATTTCC
CCCAATCTCA GGCACACTTT TAGCACTCTT GGTGCTCACA ATATCAGTGT AAAAATTATT
CCTTCCGGAG AAGATCTGAA CAGTATTAAT AATAAATTTT ATAAATCTCT GTATGTAATT
CCCAAACCAA AGCTCACCCT TGTTACCAGT GAGCCAAATT CACCCCTCAC TCAAATCCTT
AATAAACTTT ACAACACCTC TGTTTCCACT ACATATCCTG GAGCAAGTGC TCTGAATAGT
AGCAAAGCTC TGGTACTTGA TAACCAGTTC GCTGATAATC TTTCAGAAAC TCAAGTAAAA
GAAATTAGAA AGTATGTTAC TAATGGGGGT GGACTGGTAG TTGTAGGAGG AGAAAGAGCA
TATAATTACG GCAATTATCT TAATTCCTCG TTTGAAAAAA TCCTACCTGT GCTTTCAAAG
CCTTCCGAAT ATAAGGGAGG TCGGAATCTC GTCCTTATCC TTGACGTTTC TCCCAGTACT
GCAGCTCACA AAACCCAGGG AGATATTCTG GGAAATGCCA TATATATTCT TCAGAACGAA
AATCTCAAAG ATGCAAATGC CGAAGTTATC GCATTTGGAA GCAAGGGATA TGATGTTTCC
GGAGGTTTTG TTTTCCTGGG GCTTGCTCAG AACCAGGCGA CTCTTAAAGA CAAGATTGAG
CGACTGATTC CCGATGAGGA GAGCAAGACC TCCTTAGACG CGGGACTCAA CATTTCAAAG
GAAATGCTTA CCGGCAAGGA AGGCGAACTT GATGCTGTTA TCATTTCAGA TGGAGCAATC
GCGGATTCCT ACGAGCCAAG CCTTCAGACT GCAAAAGAAA TGCAAAAACT CGGTGTAAAC
CTGTACTTTA TCCATATTCG TTCAGTAGCT CCTTCCCAGA CTGACAAATC CAGAAATTAT
TATGCTGAGA TGTTTATGAA GGAACTAGGG CTTGAAAATA ACTATTTCCA CATTAATATG
AGTGAAAGGG CAAATATAGT CTTTGAGCCA ACCGATAAGT CTCAGGAGAG AGAGAACGAA
GAAGAAAAAG AGACAGAAGA AAATGCAACG TCTGATTATT CTCTCTATGC TTATTCTCCA
AATAGCTTCA TTACGAAAAA TGTGAACCTT ACTTCCAATA TCACGGGATA TAACGACGTG
ACTCCAAAAG CCGGGGCCGA ACGTTTGGTT ATAACTACTT CAAATGGAAA ACCAGTACTT
ACCACATGGC GCTTCGGACT AGGAAGAGTT GCAGCTTTTA CCACAGACAA TGGAGAAGGG
GACGGTTCTC GCTGGGCGAC TAATGTTTAT AACGGATCGA GTGCCAGACT AATTTCAAGT
ATGATCAATT GGGCAATAGC GAACCCGAGA GCTGAAGAAG GAACTGTTGT GGACAGCCCG
GATACCTGGC TTGGCACTCC CTCCAACCTG ACACTTACAA TGTACGATGA AGGAATCCCG
CAGCTAAAAC TGGATGGTAA TGCTCTGGAC CTTGCTCTAA CCGGAAAAAA TACCTATGAG
ACAAATGTGA ATCCGGATAA TATTGGGATT CATGATATCT CAGGCTACCC ACTTGCGGTA
AATTATCAGC TTGAGTATCG GGATGTAGGT CTCAATGAGG ATATAGAGCC TCTTGTCCTT
GCGACTGGAG GGAAAATTTA CAATGAAAAG GAGGCAAGAG CCCTTCTACT GAAAGATGCG
CGGCAGAATT CAGTGAAACA ATCTGATGAG CGGGTAAGCC TGAAAGTGTA TGTACTACTT
ACTGCGCTTG TGCTTTATCT GGGAGAAATC CTTGCCAGGC GCATAAGGGA AATGAGAAAG
CTCAAGAATG CGCAGGTTGA GACCTAA
|
|---|
| Protein sequence | MNISLEHPEM LLLIIPVTIA GFYLLRKTKT KIVEWRMLVA FLLVLALAAP FTTATQTVNE
DNPSLVLIQD KTSSMELFSN ETGTDLYKAL AADTSTTLVQ LTGDKTNLGD AVTQYSGTGN
QIVLITDGNN NSGKSLVDAL GFAKETNTSV YLVEPELKTN DLSVEILGDK SVVVDNPNEF
KIIVRQASNQ SVSYSYEAYV DGELSQSGDV TQNSTQYSIS PNLRHTFSTL GAHNISVKII
PSGEDLNSIN NKFYKSLYVI PKPKLTLVTS EPNSPLTQIL NKLYNTSVST TYPGASALNS
SKALVLDNQF ADNLSETQVK EIRKYVTNGG GLVVVGGERA YNYGNYLNSS FEKILPVLSK
PSEYKGGRNL VLILDVSPST AAHKTQGDIL GNAIYILQNE NLKDANAEVI AFGSKGYDVS
GGFVFLGLAQ NQATLKDKIE RLIPDEESKT SLDAGLNISK EMLTGKEGEL DAVIISDGAI
ADSYEPSLQT AKEMQKLGVN LYFIHIRSVA PSQTDKSRNY YAEMFMKELG LENNYFHINM
SERANIVFEP TDKSQERENE EEKETEENAT SDYSLYAYSP NSFITKNVNL TSNITGYNDV
TPKAGAERLV ITTSNGKPVL TTWRFGLGRV AAFTTDNGEG DGSRWATNVY NGSSARLISS
MINWAIANPR AEEGTVVDSP DTWLGTPSNL TLTMYDEGIP QLKLDGNALD LALTGKNTYE
TNVNPDNIGI HDISGYPLAV NYQLEYRDVG LNEDIEPLVL ATGGKIYNEK EARALLLKDA
RQNSVKQSDE RVSLKVYVLL TALVLYLGEI LARRIREMRK LKNAQVET
|
|---|
| |