| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1104 |
|---|
| Symbol | |
|---|
| ID | 3627515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 1353162 |
|---|
| End bp | 1354058 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637699995 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_304652 |
|---|
| Protein GI | 73668637 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGGGA GTTTTTCAGT TACAGTGGAT CTTGAAGATT GGTATCATAT TCCTTCAGTC
TGCAGTTCTC CTTACGCCGT TTACAGGACT GTAAACGAGT TTTTTGAAAA ATGGGAAGGC
AGGTACGATT ACCTGACTGA ACCTACAAAA AGGGCATTGG ATATTCTCGA TGAGTTCAAC
GTGACTGCTA CTTTCTTTGT AGTTGCGGAT ATTGTAGAAC ACTATCCTGG ACTTGTCGAG
TCAATTGTGG AAAGAGGGCA TGAAATTGCA TGTCACGGTC TGCATCACGC CTGCAAAATC
AATCCTGAGA CAAAGGAGCG ATTAATGAGT AACGATGAAT TCGAGCAGAA GACGTTGCGT
GCGAAAAGAA TTCTTGAAAA AGTTAGTGGG GAGAGAGTAG TAGGCTACAG GGCACCAAAT
GCCTTTATAG GTGGCTGGAT GCTAGATTCA CTTGAAAGCA TCGGGTTCAG ATATGATTCT
TCAGTTTCCG TAAATTCTCT TTATAATAAA ACGGATTCGT CCCTTAAGAC AGTGTCATCT
TTTCCTTACT ATCCTTTAGA GAACGGGCTT GAGGCAGGCG AAGACAGAAA TTTTATTGAA
TTCCCCTGGG CATATTATCA GAACATACTT AAAATTCCGG CGTCAGGGGG TCCGATACTC
CGCTTTCTTG GAGCCCCTCT GGTATTGAAT GGGCTTATCC AGAGTTTGAA AAGAGGACAT
ACTATCTTTT ATTTCCATCC AATTGATATT TCCTGTACTA AATTCCCTTC AGTAGGGAAC
AACAGACCAT TTTACTGGTG TATGAAGGGA AAGCTTGTAG AACGCAGAAT TCGTCACATT
CTGAAAGCTC TGAATGATGT TAATAAAGTG TGCCTAAGGG ACTACCCAGA AATATAG
|
|---|
| Protein sequence | MKGSFSVTVD LEDWYHIPSV CSSPYAVYRT VNEFFEKWEG RYDYLTEPTK RALDILDEFN
VTATFFVVAD IVEHYPGLVE SIVERGHEIA CHGLHHACKI NPETKERLMS NDEFEQKTLR
AKRILEKVSG ERVVGYRAPN AFIGGWMLDS LESIGFRYDS SVSVNSLYNK TDSSLKTVSS
FPYYPLENGL EAGEDRNFIE FPWAYYQNIL KIPASGGPIL RFLGAPLVLN GLIQSLKRGH
TIFYFHPIDI SCTKFPSVGN NRPFYWCMKG KLVERRIRHI LKALNDVNKV CLRDYPEI
|
|---|
| |