| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A0979 |
|---|
| Symbol | |
|---|
| ID | 3625751 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 1194667 |
|---|
| End bp | 1196220 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637699872 |
|---|
| Product | pheromone shutdown protein |
|---|
| Protein accession | YP_304531 |
|---|
| Protein GI | 73668516 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1916] Uncharacterized homolog of PrgY (pheromone shutdown protein) |
|---|
| TIGRFAM ID | [TIGR00261] pheromone shutdown-related protein TraB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAC CTGAAATTAC AGATTCTCAG GACAAGGACC CTGACTACAA TTTTCATAGT
TCATCTCAGG AGTCAATATA TTCTATGGAC AAACTTGTGA CCGAATCCGC AGAAAACTTC
ACTTCTGTTG GAAAGTCTAA AATTCCGGGT TCTTCAATTA ACATGCCGCA GGAAGAAAAA
ACTTCTGTGC CAGCATCCAA AATAGAACCT GACGAACTTG AAACAAAACT TGAAACAAAG
CTTGAAACAA AGCTTGACAT CAGTTCCGAA ATTATTGCAG AATCTATTCC TGATTCGGCT
TCCGAAGTTT CAATTCCTTC ATCTTCCCAA TTCTCTGATG CACATCAGGC TGAGTATCAG
CCATCAAAAA TTGTGCTTAT AGGAACCGCC CATGTCTCTG AAAAGAGTGT TGCTGAGGTC
AAGGCCGCTA TAAGGGATCT AAAACCGGAT ATCGTAGCTG TCGAGCTTTG CAGGGGACGT
TATGATTCCC TGAAGGGTAA TGTGCAGGAA AAACAGGTTC CTATTAAGGA CATTCTTTCT
GAAGGTAAGG TTAACTATTA CGTTATTCAC TGGCTGCTTG CCTATGTGCA GAAAAAAATC
GGTGATGATA TGGGTGTAAG ACCCGGAGCC GAGATGCTTT CCGCAATCGA GGAAGCCGAG
TCTATAGGAG CTAAAGTTGC CCTAATTGAC CGTGATATCC AGGTGACCCT TCAGCGTTTC
TGGGGAAAAA TGAAGTTCCT GGAAAAAGTC AAAATGATTG GCTCCCTGTT AGGTGGCCTA
ATAGGAATAG GAAAAGGAAC CGAAATAGAT ATTGATAAAA TTACAGAAAC CGATGTTGTA
ACTGGTCTCG TAAATGAACT CAGAGATTTT GCCCCGACTG CAGCAGAGGT TCTCATTGAT
GAAAGGGATG CATATCTAGC AGGAAGCATC CTCAATGTCG CGGCAGGTGG AAACAAAACT
GTTGTCGTGG TAATTGGAGC CGGACATAAA CCGGGAGTAA CTAAGTACCT GAAAAATCCG
AAAAGCGTTC CTTCTCTGAG TAATCTTATG CAGGTTCCAA AGAAACGTAT AGGTCTTGGA
AAGATTGTTG GCTTTGCTTT TGTCGCCGTT ATAGTTGGAT TCTTTTTAAT ACTGCTGCTT
TCTGGCGTTC CGCTGAAACT CCTTTTAATA GCCTTTGGAT GGTGGTTTAT TATTACAGGA
ACCCTCAGTG CAATCGGTAC TTTACTTGCA GGCGGCCATC CTTACTCAGT TCTGACTGCC
TTTTCGGTTG CCTGGCTAAC TACTTTGCAC CCTCTTATTG CCGCAGGCTG GTTTGCTGGT
CTTGTAGAAG CGAAACAGCG AAACCCTACT ACTGCGGACA TAAAAGCCCT GGCAGGAGTA
GAAACTTTCA GGGAAATGTT CAAAAATAAG TTCATGCGAG TCCTCCTTGT CGCAAGCTTT
GCAAACATAG GAAGTATGAC AGGGACTTTC GTTGCAGCTT ATGTCATGCT GCATGTAACT
GGCATTGATC CGAGAGATGT TCTACTTTCT GGGTTCAATG CACTCGGACT CTAA
|
|---|
| Protein sequence | MSKPEITDSQ DKDPDYNFHS SSQESIYSMD KLVTESAENF TSVGKSKIPG SSINMPQEEK
TSVPASKIEP DELETKLETK LETKLDISSE IIAESIPDSA SEVSIPSSSQ FSDAHQAEYQ
PSKIVLIGTA HVSEKSVAEV KAAIRDLKPD IVAVELCRGR YDSLKGNVQE KQVPIKDILS
EGKVNYYVIH WLLAYVQKKI GDDMGVRPGA EMLSAIEEAE SIGAKVALID RDIQVTLQRF
WGKMKFLEKV KMIGSLLGGL IGIGKGTEID IDKITETDVV TGLVNELRDF APTAAEVLID
ERDAYLAGSI LNVAAGGNKT VVVVIGAGHK PGVTKYLKNP KSVPSLSNLM QVPKKRIGLG
KIVGFAFVAV IVGFFLILLL SGVPLKLLLI AFGWWFIITG TLSAIGTLLA GGHPYSVLTA
FSVAWLTTLH PLIAAGWFAG LVEAKQRNPT TADIKALAGV ETFREMFKNK FMRVLLVASF
ANIGSMTGTF VAAYVMLHVT GIDPRDVLLS GFNALGL
|
|---|
| |