| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A0540 |
|---|
| Symbol | |
|---|
| ID | 3627099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 642196 |
|---|
| End bp | 644217 |
|---|
| Gene Length | 2022 bp |
|---|
| Protein Length | 673 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637699432 |
|---|
| Product | glucoamylase |
|---|
| Protein accession | YP_304101 |
|---|
| Protein GI | 73668086 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
|---|
| TIGRFAM ID | [TIGR01577] oligosaccharide amylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATAAAGC AACCCAATGT TATCCTCGGA AATGACGATC TGCTTGTAAC AATGAGAAAA
AAAGGGGAAA TCATAGGTTT TTTTTATCCT CGCCGAGACC ATGCTCAGCA TATCGAGGAA
TCTGTTGCCT GTATTCATAC AGGAGAAAGG CTTCTCTGGA CCTATGATAA CGAATGGCAA
GGAATCCAGA ACTATATAGA GGACACAAAT ATTGTGTCAA CAAAACTTTA CCATGATTCG
GGAATCCGTA TTTCCATTCT TGACCTTGTG CACCCTGACG TGCCTATCCT TATCCGCAGG
TTTAAGATCC AGTCCCAGAA TAAGCTTTCA GGAAAATTCT TTTATTACTC GAATTTTAAC
GTAGGGGAAA CCTCCAAGAA AAACTCCGGG TTTTGCGATA CCGATATTCA TTTGCTCGTA
CAATACTGGC AAAACTATCA TATAGGGATA TATTCCCAGC CAGAGTTTAA TGAGTGGCAA
ATTGGAAAGG CAATGGATAC TATATGGTGG ACGAATTCCA AATATGATAT GGAAGATGGA
AAACTCCAGA GGAATAAAGA AGACATAGGA AATATTAATA ACGCGGCTGG CTGGGATCTT
GAACTGGAGG CTGACGGATC AAACGAGTTT GTGATCTTTA TAGGCGCTGC TTCTTCCCGA
CGCCTCCTGT ATAAGAGAAT GCAAGAGCTC TCAAAACTGC CTCTTGAATA CATTTTTGAA
AAGACGCGGG AACACTGGGT TATGTGGCTT TCCAGAAAGC AGGTGATCAA GATCCCAGGA
CTTGAAGAAT ACGATAACCT GCGCCAGGAT CTGTTCAATG CCTATAACCG GGCTCTTTTG
ATGCTTTACC TCCTTAATGA CCGCGAATAT GGGTCTTTCG TAGCTGCTCC GGAATTTGAC
TCAAACTTCG AGAAATGCGG AGGATATGGA TTTTGCTGGA ACAGAGATGC TGCAGAAATC
GTGCTTGCAC TAAAGCACTC AGGCTATCCA GACTATTGTG ACATGTTTTT CAAATGGTGC
ATCCAGACTC AGCTCTCTGA TGGTTCGTGG TTTCAACGCT ACTGGCTAAA TGGGGATATA
GCTCCCTCAT GGGGTAATTT TGACTACTCA ACTCAGATTG ACGAAACCGG GTCCACGCTC
TATGCTATGG ATGTTTATTA CAGGATTCTC GAAGGCCTGA AAAAAGCTGA ATTTCTTGAA
GAGGTCTGGG TCTCGGTGCT CAGAGCTGCC GAATACCTGA TGAAGCGGAC CAAATCAGGA
ATTCACGAAA GATGTATGGA TCTCTGGGAA ACTTACTACG GAATTTTTAC ATATACAAAT
GCTTCGATTT ATGCCGGGCT CATGGGTGCT TCCCATCTGG CGGAAGAAAA TGGGGAAGCT
GGCATGGCAA GACGCTGGAA AAAGAGAGCG GAGTTCGTCA AACAGGCTAC GATTGACCGT
TTCTGGCTTC AGGAAGGCTA CTTTGCAAAA GGAGTAATTA ACGAGAAGCT GGACAAAACT
ATTGATGCAA GTATTCTTGG CACCTATGTT CCTTTTGGAA TGCTCTCTGC AAAAGACCCC
CTGGAAAAGG AGATGATTCA GTTCATGATA GAGAACATTC AGAAAAAACT CTCAGTACCC
ATAAATCTCG GTTACGGCAT TAAAAGGTAT GAAAACGACA GTTACATAAA CGGAAACCCG
TGGGTAGTAA CTACGCTCTG GCTTTCGGAA GCAATGTTTA CCTTTGCCCT TGAACTTTCC
AATGAAAAAG AAAACTTTTC CCCCACTCAG GAGGGCACCT ATGAAAAAGA AGAAAGACCT
GAAGAAACAG TTAAAAGGCT GACCAAGGAA GGAATTGGAT ACCTCAAATG GGCTCTTGCC
GGAGCAACCA GTACAGGGCT TCTCCCGGAG CAAGTAGATC AGTCTACAGG CAGCCCTGCC
TGGGCAATCC CTCTAGGATG GAGTGGATCT CTGATACTTA ATAATATTCT GCTTCTGGAC
AAAATCTGCA GGATAAAAGC CGGGAATATG CAAGAAAGCT AA
|
|---|
| Protein sequence | MIKQPNVILG NDDLLVTMRK KGEIIGFFYP RRDHAQHIEE SVACIHTGER LLWTYDNEWQ
GIQNYIEDTN IVSTKLYHDS GIRISILDLV HPDVPILIRR FKIQSQNKLS GKFFYYSNFN
VGETSKKNSG FCDTDIHLLV QYWQNYHIGI YSQPEFNEWQ IGKAMDTIWW TNSKYDMEDG
KLQRNKEDIG NINNAAGWDL ELEADGSNEF VIFIGAASSR RLLYKRMQEL SKLPLEYIFE
KTREHWVMWL SRKQVIKIPG LEEYDNLRQD LFNAYNRALL MLYLLNDREY GSFVAAPEFD
SNFEKCGGYG FCWNRDAAEI VLALKHSGYP DYCDMFFKWC IQTQLSDGSW FQRYWLNGDI
APSWGNFDYS TQIDETGSTL YAMDVYYRIL EGLKKAEFLE EVWVSVLRAA EYLMKRTKSG
IHERCMDLWE TYYGIFTYTN ASIYAGLMGA SHLAEENGEA GMARRWKKRA EFVKQATIDR
FWLQEGYFAK GVINEKLDKT IDASILGTYV PFGMLSAKDP LEKEMIQFMI ENIQKKLSVP
INLGYGIKRY ENDSYINGNP WVVTTLWLSE AMFTFALELS NEKENFSPTQ EGTYEKEERP
EETVKRLTKE GIGYLKWALA GATSTGLLPE QVDQSTGSPA WAIPLGWSGS LILNNILLLD
KICRIKAGNM QES
|
|---|
| |