| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A0196 |
|---|
| Symbol | |
|---|
| ID | 3625431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 229257 |
|---|
| End bp | 229751 |
|---|
| Gene Length | 495 bp |
|---|
| Protein Length | 164 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637699087 |
|---|
| Product | transcription factor IIE (TFIIE), alpha subunit |
|---|
| Protein accession | YP_303760 |
|---|
| Protein GI | 73667745 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1675] Transcription initiation factor IIE, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00373] conserved hypothetical protein TIGR00373 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGTCGATT TAAATGACAA GGTAATTAGA GGATACCTCC TGAGCCTTGT AGGGGAAGAC
GGGCTACAAA TGATTGAAAA AATGCCTGAA GGCGAGGTTA CGGATGAAGA AATTGCGGCA
AAGACCGAGG TTCTGTTGAA CACCGTGAGG AGAACTCTCT TCATATTAAA CGAAAACAAA
TTTGCGATAT GTCGTAGGGA GAGAGATTCA AACAGTGGGT GGTTAACATA CCTCTGGCGC
CTGGATTTTT CTGACATAGA GCACCAGCTT ATGAAGGAAA AGAAAAAATT GCTCCGCAAC
CTGAAGACCC GCCTTGAGTT CGAAGAAAAT AATGTTTTCT ATATGTGCCC TCAGGGTTGT
GTTCGCCTTC TTTTTGACGA AGCTACAGAA ACCGAGTTTC TTTGTCCCAT GTGTGGAGAA
GACCTGGTCT TCTACGACAA CTCCCATTTT ATTGATGTCC TGAGAAAGCG TGTAGATGCT
CTCAGTTCAG CGTAA
|
|---|
| Protein sequence | MVDLNDKVIR GYLLSLVGED GLQMIEKMPE GEVTDEEIAA KTEVLLNTVR RTLFILNENK
FAICRRERDS NSGWLTYLWR LDFSDIEHQL MKEKKKLLRN LKTRLEFEEN NVFYMCPQGC
VRLLFDEATE TEFLCPMCGE DLVFYDNSHF IDVLRKRVDA LSSA
|
|---|
| |