Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mbar_A0193 |
Symbol | |
ID | 3625428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosarcina barkeri str. Fusaro |
Kingdom | Archaea |
Replicon accession | NC_007355 |
Strand | - |
Start bp | 225819 |
End bp | 227732 |
Gene Length | 1914 bp |
Protein Length | 637 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637699084 |
Product | cleavage and polyadenylation specificity factor |
Protein accession | YP_303757 |
Protein GI | 73667742 |
COG category | [R] General function prediction only |
COG ID | [COG1782] Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain |
TIGRFAM ID | [TIGR03675] arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.209182 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTATTG AAGATGTGCT ATTAGACCTC AAACATAAAA TTGAGAAAAA TCTACCCGCG GGAGTTACAA TCACCGACGT GGAATTTGAA GGTCCTCAGC TTGTTCTATA TACTGAAGAG CCCCGCAAAT TCGCGGACGA CGGGAACATT ATTCGCAACC TCGCAAAAGA ACTCAGAACG CGGATTGCCA TGCGCCCTGA TCCCAGGGTA CTTGCAACTG CTGAAGACTC TATTTCTATA ATCGAAGAAG TTGTTCCAAA AGAATCCGTA ATCTCAAGCT ATTATTTTGA CCCAGATTCC GGAGAAGTAA TTATTGAAGC TGAAAAGCCT GGTCTTGTGA TAGGAAAGCA CGGAGCAACC CTCCGTGAGA TCACAAAGCA GATTGGCTGG ATTCCAAAGG TTGTGCGGAC TCCCCCTATC AAATCCCGTA CAGTAAAGAA TGTAAGGGAA TTTATGAGAA ACAACCTCAA GGAAAGAAAA GAGATTCTTA AATCAGTGGG GAGGAAGATT CACAAAGAGT GTACCTCTAA AGATCAGTGG GTAAGGGTTA CATCACTTGG GGGCTGCAAA GAAGTGGGGA GGAGTTGTTT CCTGCTCTCT ACTCCTGAGT CCCGAATCCT GATCGACTGC GGAGTCAATG TAGGTTCGGA CGAAAACATG ACTCCTTACC TGTATGTTCC TGAAGTTTTT CCGTTAAACC AGATCGATGC CGTGATAGTT ACTCACGCCC ACCTGGATCA TCAGGGGCTT GTTCCTTTGC TTTTCAAATT CGGATATGAA GGGCCTGTCT ACTGTACGCC CCCTACGCGG GATTTGATGG TGCTGCTCCA GCTTGACTAC ATCGACGTGG CAGCAAAAGA AGGGAAAAAG ATTCCCTATG AGTCAGGCAT GGTAGCAAAG ACTCTCAAAC ACACAATTCC GCTGGACTAC GAGGAAGTAA CGGATATCGC TCCTGATATC AAACTGACTT TCCATAATGC AGGCCATATT CTGGGGTCAG CTATTTCTCA TTTCCATATT GGAGACGGGC TCCATAATGT CGTCTTTACG GGAGACTACA AATATGAGAA GACGCGGCTT TTTGATCCTG CTGTCAATAA GTTTCCGAGA GTCGAAACTG TTGTCAGTGA AGCTACTTAT GGAAATTCCA ATGCTTTCCA GCCCTCACTT AAGGACGCCG AAAGGCACCT GCAGATGGTA GTTAAGAACA CTGTGGAAAG GGGAGGAATT TGTATCATCC CGGCTTTTGC AGTAGGTCGA AGCCAGGAAG TTATGATAGT GCTTGAAGAA TCTATAAGAA AAGGGCTGAT TCCTGAAGTT CCGGTCTATC TGGACGGAAT GATCTGGGAA GCAACGGCAA TTCATGCTAC ACATCCCGAG TACCTGAATA ATGATCTGAG GAAACTGATC TTCCAGAAAG GCCAGAACCC CTTCCTGTCC GAATGCTTCA AGCCTGTTGA TTCCCACGAC ATGCGCCAGA AGATAATTCA GAACCCTCAC CCCTGTGTAA TCATCTCGAC ATCAGGCATG ATGAACGGAG GGCCGGTTAT GGAGTATTTC AAGGCCTTTG CCGACGAACC ACGCAATTCT CTGGTGTTTG TAGGGTACCA GGCCGATGGA ACAATCGGAC GTAGAATCCA GAAAGGATGG AAAGAAATTC CGATGACAGG AAAGGGTGGA AGCACTGAAA TCCTGAAGTT AAACATGGAA GTTCAGGTAG TTGACGGTTT CTCAGGTCAC TCCGATAGGA GACAGCTTAT GGATTACATC AAGAGGATGC AGCCTCGTCC GGAAAGAGTA TTTACTGAGC ATGGGGACGA AAAAGCTTGT GTTGACCTGG CAAGTTCAAT TTATAAGAAA CTGAAAATTG AAACCAGGGC GCTTACAAAC CTTGAAACCG TAAGGTTACT GTGA
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Protein sequence | MPIEDVLLDL KHKIEKNLPA GVTITDVEFE GPQLVLYTEE PRKFADDGNI IRNLAKELRT RIAMRPDPRV LATAEDSISI IEEVVPKESV ISSYYFDPDS GEVIIEAEKP GLVIGKHGAT LREITKQIGW IPKVVRTPPI KSRTVKNVRE FMRNNLKERK EILKSVGRKI HKECTSKDQW VRVTSLGGCK EVGRSCFLLS TPESRILIDC GVNVGSDENM TPYLYVPEVF PLNQIDAVIV THAHLDHQGL VPLLFKFGYE GPVYCTPPTR DLMVLLQLDY IDVAAKEGKK IPYESGMVAK TLKHTIPLDY EEVTDIAPDI KLTFHNAGHI LGSAISHFHI GDGLHNVVFT GDYKYEKTRL FDPAVNKFPR VETVVSEATY GNSNAFQPSL KDAERHLQMV VKNTVERGGI CIIPAFAVGR SQEVMIVLEE SIRKGLIPEV PVYLDGMIWE ATAIHATHPE YLNNDLRKLI FQKGQNPFLS ECFKPVDSHD MRQKIIQNPH PCVIISTSGM MNGGPVMEYF KAFADEPRNS LVFVGYQADG TIGRRIQKGW KEIPMTGKGG STEILKLNME VQVVDGFSGH SDRRQLMDYI KRMQPRPERV FTEHGDEKAC VDLASSIYKK LKIETRALTN LETVRLL
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