| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Reut_B5079 |
|---|
| Symbol | ligD |
|---|
| ID | 3613364 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia eutropha JMP134 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007348 |
|---|
| Strand | + |
|---|
| Start bp | 1817933 |
|---|
| End bp | 1820638 |
|---|
| Gene Length | 2706 bp |
|---|
| Protein Length | 901 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637694507 |
|---|
| Product | ATP-dependent DNA ligase |
|---|
| Protein accession | YP_299271 |
|---|
| Protein GI | 73538904 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
|---|
| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.795218 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGA CCACGCGCCA GACCCCTGAC GACACCCGCG GCACGCGTAG CACCCGAACT
GCGGAGCCCG CGCGCAAGCG CCCGGCCGAC GCGCTCGGCA AGTATCGCCA GATGCGGGAT
TTCGCAGCCA CGCCCGAACC CGGCGGCACG CGCCAGCGCG CCAGGGCAAC GCCAAAGGCA
AAGCGCGCCG GCACCTTGTC CTTCGTCATC CAGAAGCACG CTGCGCGGCG GTTGCATTAT
GACTTCCGGC TGGAACTCGA CGGCACGCTG AAAAGCTGGG CCGTGCCAAA GGGTCCGAGC
CTGGACCCCG CCGACAAGCG CATGGCGGTG CATGTGGAAG ACCATCCGCT CGACTATGCG
GGCTTCGAGG GCGTGATCCC GCCGGGCCAC TACGGCGCTG GCACGGTGAT CGTGTGGGAT
CGTGGGATCT GGGTGCCCGA CGGCGATGCC GATGCGGCCT ATCGCGCCGG CAAGCTCAAG
TTCGAGTTGC GCGGCGAAAA GCTGCATGGC CACTGGACGC TGGTGCGCAT GCACGGCAGC
CGGCAGAAGG AGCAGGATGC CTGGCTGCTG ATCAAGGAGC GCGACGATGC GGCGGTGCCC
GCATCCGAAT TCGACGTGAC CGAAGCGCTG CCCGACAGCG TGCTGGCCGG CACATCGGCC
GCGCGCAAGA CCACCGGGCG AAGGGCCGCT ACGAACGCTA CGAAGCCCGG CAACGGCGCC
AAGGACAGCA CCAAGGACAG CGCCAGAACC AAGCCCTTGC CGCTCCCACG TCGCGCCACT
GCCGCAGCAC TGCCGCTCGC GCTGTCGCCG CAACTGGCCA CGCTGGTCGA GCGAGCGCCC
CCCGATGCCG ATGCATGGCG CTACGAGATC AAGTTCGACG GCTACCGCAT GCTGGCCCGT
ATCGACGGCG ACGACGTGCG CTTGTTTACG CGCCAGGGCC ACGACTGGAC ATCGCGCCTC
AAGACGCTCG CGCGCGAAGT GCGCGCGCTC GGATTGCCCG ATGGCTGGCT CGATGGGGAA
ATCGTCGTGC TCGGCAAGCA CGGCGAGACC GATTTCCAGG CCTTGCAGAA TGCCTTCGAG
ACGTCGCACG TGGAATCGAT CCAGTACTTC GTCTTCGACC TGCCGTTCTA TGCCGGCCAC
GACCTGCGCA AGGCGCCGCT GTCCGAACGG CGCGCGCTGC TGCGGCGCCT GTTCGAGAAC
AACACCGGCA CACGCCTGCG CTTCAGCGAG GAATTCGAAG CCGCCCCCGA CGAAATGCTC
GACGCTGCCT GTCGCATGAA GCTCGAAGGC GTGATCGGCA AGCGCATCGA CGCGCCGTAT
GTCAGCACGC GCAGCAACAC GTGGATCAAG CTCAAATGCA CGCAGCGCCA GGAGTTCGTG
ATCGGCGGCT TTACCGAGCC CAAGGGCAGC CGCCAGGGTC TCGGCTCCCT GCTGCTCGGC
GTGCACGACA GCGCCGGGCG CCTGCGTTAT GCGGGCAATG TGGGAACGGG GTTCGATACG
CGCTCGCTGG CCAGCCTGCG CGAACAGCTG GATGCGCAGC GCACGGACAA GGCGCCCTTC
CATGAGCTGC CCTCCTCGAT CAAGGGGCTG TGGGTTCGGC CGCGGCTCGT GGCCGAGGTG
TCGTTCGGAT CGTGGACGCG CGAAGGCCGC GTGCGCCATG CCGTGTTCCA TGGCTTGCGC
AGCGATAAAC CCGCCAGCGC GGTGTCCGTG GAAAAGCCCG CCGCACCCGC CGGCCGCAAG
ACGGCGGCCA CAACCGCAGC CAGGAGCGCG CCAGCCACCA CACGCAAGGG CAAACCCACG
GCGGCGAACG GCAAGGTCGC CATCAGTCAC TCGGAGCGCG TCATCGATAC CGCCAGCGGG
CTGACCAAGG GAGACCTGGT GCGCTACTAC GAAAGCGCGG CGCCACTGAT GCTGCCGCAT
CTGCGCGGCC GCCCCATCGC CATGGTGCGG GCGCCGGCCG GCGTCGCCGG CCAGCAGTTT
TTCCAGCGGC ATGGCGACAC GCTAAAGATC GACGGCGTCA ACGTGCTCGA TCCGGACCTG
TGGCCGGGTC ATCCGGCGCT GCTCGAGATC GTCTCGGAGC ACGCACTGGT GGCCGCGGCG
CAGCTTAATG TGGTGGAGTT CCATACCTGG AATGCCAACA AGCGCAGCAT GGACCGGCCC
AACCGCATCA TCTTCGATCT CGACCCCGGG GAGGGCGTGC CGTGGCCGCA CATGCGCGAA
GCCGCGGCGC TGATGAAGGC GTGGCTTGAC GAACTCGGGC TCGCCAGTTT CCTGAAGACC
AGCGGCGGCA AGGGCCTGCA CGTGGTGGTG CCGCTGACAC CGCGCGCGGG CTGGGATGAG
GTCAAGGAGT TTGCCCACGG TGTGGTGCTG CACATGGCCG TGACGATTCC GCAGCGCTTC
GTGGCCAAGA GCGGCGCGGG CAACCGCATT GGCAAGATTT TCATCGATTA CCTGCGCAAT
GGCGTTGGCG CCACGACGGC CGCGGCATTC TCCGCGCGGG CGCGCCCCGG CCTGGGCGTG
TCGGTTCCGC TTGCGTGGGA CGAGCTCGAC GGGCTCGAGG CCTCCGACCA GTGGACCGTC
GCCAATGTGG CGCCTCGCCT GGACGAGCTG GCACGCCACG ACCCCTGGGA CACTTATGCG
GACACCCGCC AGACCATCAC GCGCGCTGCC ACCAGGCTGG CTCGCGCCGG AAGGAGCAAG
CCATGA
|
|---|
| Protein sequence | MAKTTRQTPD DTRGTRSTRT AEPARKRPAD ALGKYRQMRD FAATPEPGGT RQRARATPKA
KRAGTLSFVI QKHAARRLHY DFRLELDGTL KSWAVPKGPS LDPADKRMAV HVEDHPLDYA
GFEGVIPPGH YGAGTVIVWD RGIWVPDGDA DAAYRAGKLK FELRGEKLHG HWTLVRMHGS
RQKEQDAWLL IKERDDAAVP ASEFDVTEAL PDSVLAGTSA ARKTTGRRAA TNATKPGNGA
KDSTKDSART KPLPLPRRAT AAALPLALSP QLATLVERAP PDADAWRYEI KFDGYRMLAR
IDGDDVRLFT RQGHDWTSRL KTLAREVRAL GLPDGWLDGE IVVLGKHGET DFQALQNAFE
TSHVESIQYF VFDLPFYAGH DLRKAPLSER RALLRRLFEN NTGTRLRFSE EFEAAPDEML
DAACRMKLEG VIGKRIDAPY VSTRSNTWIK LKCTQRQEFV IGGFTEPKGS RQGLGSLLLG
VHDSAGRLRY AGNVGTGFDT RSLASLREQL DAQRTDKAPF HELPSSIKGL WVRPRLVAEV
SFGSWTREGR VRHAVFHGLR SDKPASAVSV EKPAAPAGRK TAATTAARSA PATTRKGKPT
AANGKVAISH SERVIDTASG LTKGDLVRYY ESAAPLMLPH LRGRPIAMVR APAGVAGQQF
FQRHGDTLKI DGVNVLDPDL WPGHPALLEI VSEHALVAAA QLNVVEFHTW NANKRSMDRP
NRIIFDLDPG EGVPWPHMRE AAALMKAWLD ELGLASFLKT SGGKGLHVVV PLTPRAGWDE
VKEFAHGVVL HMAVTIPQRF VAKSGAGNRI GKIFIDYLRN GVGATTAAAF SARARPGLGV
SVPLAWDELD GLEASDQWTV ANVAPRLDEL ARHDPWDTYA DTRQTITRAA TRLARAGRSK
P
|
|---|
| |