| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Reut_B3918 |
|---|
| Symbol | |
|---|
| ID | 3613309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia eutropha JMP134 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007348 |
|---|
| Strand | + |
|---|
| Start bp | 549609 |
|---|
| End bp | 551258 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637693352 |
|---|
| Product | cyclohexanecarboxylate-CoA ligase |
|---|
| Protein accession | YP_298119 |
|---|
| Protein GI | 73537752 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | [TIGR03208] cyclohexanecarboxylate-CoA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.570213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCG ACGCGGTACT GATTGCGCCG CGCCGCGCGG CGAGCGTGGC GGCAGGGCTG
TGGCGTGACC GCACCATCAA CGATTATTTC GACGCCACTG TGGCGCGTGC GCCCGACGGC
CCGGCGCTCA CGTCGCTGCA GGTGGAAAGC GGGGCGGTGC GGCATTTCAC GTGGCGTCAG
CTCGATGCTA TGGTCACGCG CATTGCTGTC GGGCTGCGCC GGCTCGGCAT CGAACGCAAT
GACGTGGTGT CGTGCCAGCT TCCCAATGGC TGGGAGGTCA CGGCTCTGTA TCTGGCCTGC
GCGCGCATCG GCGCGGTGCT CAATCCGCTG ATGCCGATCT TCCGCGAGCG CGAGCTGTCG
TTCATGCTGG CGCACGCGGA CAGCAAAGTC GTGGTCGTGC CGCAGCGGTT CCGTGGGTTT
GATCATGCGG GGATGCTGGC AGGCTTGCGC GATTCGTTGC CGGCGCTGCG TCATGTCGTG
ATCACCGGAA GCGATGGTCC CGACGGGTTT GAGGCCATGC TGTGCGGCGC CGATCGCGAC
AGCGACCCGG ATGCTGCCGC CATCCTGAGG CGCGACCGCC CCAGCCCCGA TGACGTCACC
CAGCTCATCT ATACCTCGGG CACGACGGGC GAGCCCAAGG GCGTGATGCA TACCGCGAAC
ACGCTGCTGT CCAACATCCT TCCCTATGCC GAGCGGCTGC GCCTTGGTGC CGGCGATGTG
GTGCTGATGG CCTCGCCCAT GGCGCACCAG ACCGGTTTCA TGTACGGGCT GATGATGCCC
GTGGTGCTCG GCGCGCATGC GGTGCTTCAG GACATCTGGA ATCCGGTACA GGCGGCCAGG
CTGATCCGCG AGACCGGCGT CACGTTCACG ATGGGGTCGA CGCCATTCCT CACCGATCTT
GCGCGCACGG TGGAGGAGTC CGGCCAGCCT GTGCCGAGCC TGCGTACGTT CCTGTGCGCG
GGTGCGCCGA TTCCCGGAGC GCTCGTGGAG CGAGCGCGCA CCGCGCTGGG CGCGAGCATC
GTTTCGGCCT GGGGGATGAG CGAGAACGGC GCGGTAACGA CAACGTTGCC CGATGACAGC
GAGGAGCGTG CCTCGACGAC GGACGGCTTG CCGTTGCCCG GCGTAGAGGT GAAGGTGGTG
GATGCGCAGG ATGCTTCCGT GCTGGCGGGC GAGGTTGGAC GCCTGCTCGT GCGTGCGTGC
TCGAACTTCG GCGGTTACCT GAAGCGGCCA CAACTGAACG CGACGGATGC CGAGGGATGG
TTCGATACCG GCGATCTGGC GAAGCTCGAC GCAGAGGGCT ACGTGCGCAT CGCCGGGCGC
AGCAAGGACG TGATCATCCG CGGTGGCGAG AACATCCCGG TGGTCGAGAT CGAGACGCTG
CTGTACCGGC ATCCTGCCGT AGCGCAGGTC GCCATCGTCG CGTATCCCGA TGAGCGGCTG
GGCGAGCGTG CGTGTGCCGT GGTCGTGCCC AGGCAAGGGC AGGGCTTCGA CAAGCCGGCG
ATGGTGGATT TCCTGAAGGC GCAGAAGGTG GCGCTGCAGT ACATCCCCGA ACGGCTGATC
GTGCAGGACG CCTTGCCGGC GACGCCGGCC GGCAAGATCC AGAAGTTCAG GCTGCGGGAA
ATGCTTCGGG AACAGGCTGC CGAGAGGTAA
|
|---|
| Protein sequence | MDFDAVLIAP RRAASVAAGL WRDRTINDYF DATVARAPDG PALTSLQVES GAVRHFTWRQ
LDAMVTRIAV GLRRLGIERN DVVSCQLPNG WEVTALYLAC ARIGAVLNPL MPIFRERELS
FMLAHADSKV VVVPQRFRGF DHAGMLAGLR DSLPALRHVV ITGSDGPDGF EAMLCGADRD
SDPDAAAILR RDRPSPDDVT QLIYTSGTTG EPKGVMHTAN TLLSNILPYA ERLRLGAGDV
VLMASPMAHQ TGFMYGLMMP VVLGAHAVLQ DIWNPVQAAR LIRETGVTFT MGSTPFLTDL
ARTVEESGQP VPSLRTFLCA GAPIPGALVE RARTALGASI VSAWGMSENG AVTTTLPDDS
EERASTTDGL PLPGVEVKVV DAQDASVLAG EVGRLLVRAC SNFGGYLKRP QLNATDAEGW
FDTGDLAKLD AEGYVRIAGR SKDVIIRGGE NIPVVEIETL LYRHPAVAQV AIVAYPDERL
GERACAVVVP RQGQGFDKPA MVDFLKAQKV ALQYIPERLI VQDALPATPA GKIQKFRLRE
MLREQAAER
|
|---|
| |