| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Reut_A2892 |
|---|
| Symbol | |
|---|
| ID | 3610784 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia eutropha JMP134 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007347 |
|---|
| Strand | - |
|---|
| Start bp | 3168493 |
|---|
| End bp | 3171123 |
|---|
| Gene Length | 2631 bp |
|---|
| Protein Length | 876 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637692303 |
|---|
| Product | spermine synthase |
|---|
| Protein accession | YP_297097 |
|---|
| Protein GI | 73542577 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.417277 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGAAG CGCATGCCGG CACGGACGCC GGCAAACAGC AAGCGAGGCA CAGATCGGGC
AAATCACGGC GTACGCAAGG CGCCGCCGTG CAGGCAGGGC AGGGTCAACT GGCGCAACAC
GGCGCCTTGC TGGCACCTGC CCTGTTGCTT TTCGCGTCCG GCGCGGCCGG ACTGATTTAC
CAGGTTCTCT GGATCAAGCA GCTTGCGCTC GTGGTCGGGG TGGATGTGCA CGCCGTGACC
ACGGCCGTGA GCGCGTTCTT TGCCGGGCTG GCGCTCGGCG GCTGGCTGTT CGGCCGCGTC
GCTGACCGCC ATGCGAGGCC GTTGCGGCTG TATGCGTGGC TCGAAATCGG CGTGCTCGTG
CTGGCGATTG GCGCCACGCT GTTGCTGGCA CGATCCGCTG CGCCGTTCGC ATGGCTCGAA
AGTCGTGTAG GCCTGCTGGC CTGGGCATTG CCGTTCGTGC TGGTGATCCT GCCGGCTGCA
GCCATGGGCG GCACGCTGCC AGTCTTGATG CGCGTGCTGG CGTCGCGTGC GGGGCAGGTC
GGCACGCACG GCGGGCGCTT GTATGCCGCC AATACCACGG GCGCCATTGC CGGCACGCTG
CTGGCGGGCT TCGTGCTGAT TCCGTGGCTC GGCATCACGG GCAGTGCGCT GGCCGCGGCC
ACGCTCAACG GCGTCGCAGC GATCGCCGCG TTTGCCATGG CATCGCGAGC CGTAGCAACA
GAAGCGTCGG CGGCAGACCC GGTGCCCGCA TCTGCACAGC CGGCGCGAGA TGCCGGTGGT
GGCCGGCTCG CGCTCGTGCT CTATGCCGCA GCGGGCGGCA TCGCGCTCGG CTATGAAGTG
GTCTGGTCGC AAGCGATCGT GCAGTTCATC AGCACGCGCA CGTTTGCGTT CACGGTGGTG
CTGGCCACGT ATCTGGCCGG GCTGGCGATC GGCAGCGCGC TGGCCGCGCG CCGCGCCGAT
CGCGTACGCG ATCCGTGGGG CGCATTCGCG ATGCTGATCG CCGCGGCCGG GCTCGTCGCA
CTGCTGGAAA TCGTCGTACT CGGGGAGTGG CTGCTGCTCG CGCAAGCCGC GGTATCGGCG
TGGGTGCAGT CCGCCACGTC GAACGGTCTG GCTGCCGCAT GCGCGAGCTT CGCGGTGGCG
GCGCTGTGCG TGGTGTTCGT GCCGACGCTG CTGCTGGGGG CCGCATTCCC GTTCGTGTTG
CGCGTCGGCG TGGACAACCA CCGGCTTGGC TCTGGCGTGG GTGCGGTGGT CGCGCTCAAT
ACGCTGGGTG GTATCGCGGG GACGGCTGTG GCGGGGTTTG TGCTGGTGCC GCGCATCGGG
CTTGTGCACG CACTGTCGCT GTTGGCCGTC GGTGCCGGCA TCGTTGGCGT GATCGCGGTG
GCACTCGGCT CTGGCGTGCA CAAGCTCGCA CGTTGGGCGG TGCCGATGGT GGCATTGCTC
GCCGTGATCA CCGCGGCGCT GGCGCCCGCG GACCGGCTCG CCACGCTGCT CGCACGCGCA
CGCGGTGGCG AGATTGCGTT CTACGAGGAA GGCCGCGGCG CGACTGTAGC GGTGGTGAAG
CAGGCATCTG CGACCCACAC GTTCAATCGG CTCTATATCC AGGGCGTGTC CAACTCCGGC
GACACCATGA CGTCTCTGCG CTACATGCGC CTGCAGGCGC TGCTGCCGCT GATCGTGCAT
GGCGGCACGC CGCGTTCGGT GCTGGTGATC GGTCTGGGCA CGGGCATCAC GGCCGGCGCC
ACGCTGCCGT ATCCGGGCCT TGAACATCGC GTCGTCGCAG AGCTGCTGCC ACCCGTGCTG
CGCGCGGTGC CCCAGTTCCA GGGCAACTAC AACGTGGCCG GCGACAAGCG TGTCGATATC
CGGCTGCGCG ATGGCCGGCG CGAACTGCTG CAGAGCGAAC AACGCTACGA CCTGATCACG
CTGGAGCCAC CCCCGCCTTC GGCCGCGGGC GTGGTTAACC TGTACTCGAC CGATTTCTAC
AAGCTGGCGG CGGCGCGCCT GCAGCCGGGC GGGCTGGTCG CGCAATGGCT GCCGCTGCCC
ACGCAGAACG ACGAGGACAC GCGTGCGCTG GTGCGCAGCT TCCTCGACGT GTTTCCGCAT
GCGACGTTGT GGACCACCGA GTTGCACGAG ATGATGCTGG TCGGCTCGAT GTCGCCGATC
AAGCTGGATC CGGAGCGCAT CCGCCAGCGT TTTGCCGAGC CCGAGGTGTC GGCGGCACTG
CGCGCGGTGG GCGTGACGTC GACGGCTGCA TTGCTCGCGA CCTGGGTGAC CGGCCGGGAA
GGCCTGGAGC GCTACGCGGG CGATGCGCCC GCCGTGACCG ACGACCATCC TCGCATCGAA
TACGCGGGCT GGGTGCGGCG CACGGAGTTT CCGCAGGTCC TGCAGCGGCT GCTGACGCTG
CAGACTGAGC CGCCGCTGGC GGAGGCCGAC GCGGCGCTGA TCTCCGACAT CGGACTCGAA
CGCGAAACGC TGCACACCTT CTACACGGCC GGTCTCGACG CCTACTACGG TGACCGCGAG
GCCTGGGCGC TGCATATGAA CAAGGTGATG CGCACCGATC CCGACAATCC GTACTACGCC
TGGTTCGGCG GTGGCCGCCG CGCCGCCGCC CCATCGAGGA ATCCCCAATG A
|
|---|
| Protein sequence | MREAHAGTDA GKQQARHRSG KSRRTQGAAV QAGQGQLAQH GALLAPALLL FASGAAGLIY
QVLWIKQLAL VVGVDVHAVT TAVSAFFAGL ALGGWLFGRV ADRHARPLRL YAWLEIGVLV
LAIGATLLLA RSAAPFAWLE SRVGLLAWAL PFVLVILPAA AMGGTLPVLM RVLASRAGQV
GTHGGRLYAA NTTGAIAGTL LAGFVLIPWL GITGSALAAA TLNGVAAIAA FAMASRAVAT
EASAADPVPA SAQPARDAGG GRLALVLYAA AGGIALGYEV VWSQAIVQFI STRTFAFTVV
LATYLAGLAI GSALAARRAD RVRDPWGAFA MLIAAAGLVA LLEIVVLGEW LLLAQAAVSA
WVQSATSNGL AAACASFAVA ALCVVFVPTL LLGAAFPFVL RVGVDNHRLG SGVGAVVALN
TLGGIAGTAV AGFVLVPRIG LVHALSLLAV GAGIVGVIAV ALGSGVHKLA RWAVPMVALL
AVITAALAPA DRLATLLARA RGGEIAFYEE GRGATVAVVK QASATHTFNR LYIQGVSNSG
DTMTSLRYMR LQALLPLIVH GGTPRSVLVI GLGTGITAGA TLPYPGLEHR VVAELLPPVL
RAVPQFQGNY NVAGDKRVDI RLRDGRRELL QSEQRYDLIT LEPPPPSAAG VVNLYSTDFY
KLAAARLQPG GLVAQWLPLP TQNDEDTRAL VRSFLDVFPH ATLWTTELHE MMLVGSMSPI
KLDPERIRQR FAEPEVSAAL RAVGVTSTAA LLATWVTGRE GLERYAGDAP AVTDDHPRIE
YAGWVRRTEF PQVLQRLLTL QTEPPLAEAD AALISDIGLE RETLHTFYTA GLDAYYGDRE
AWALHMNKVM RTDPDNPYYA WFGGGRRAAA PSRNPQ
|
|---|
| |