| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Reut_A0372 |
|---|
| Symbol | |
|---|
| ID | 3609439 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia eutropha JMP134 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007347 |
|---|
| Strand | + |
|---|
| Start bp | 404150 |
|---|
| End bp | 407983 |
|---|
| Gene Length | 3834 bp |
|---|
| Protein Length | 1277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637689762 |
|---|
| Product | Outer membrane autotransporter barrel |
|---|
| Protein accession | YP_294598 |
|---|
| Protein GI | 73540078 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.617347 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCGCT GCTCGCGGTT CAGATCATGC ACCTGTGCAC CGCCGTTCCG GCTTCGTCCG
CTGTGGGCGG CCATCAATCG AAGCGCGATC ATCAGTCCAC ATCTTTCCAT CCGCGCTTCC
ATCATCCTTG CCGCGCACGC CGGCACGCTG CTTTTCATCG CGATGGACGA CGCCCATGGC
CAGGCCTGCG GCACGCTCTC CGGGCTTCGC ACGGCCGGCG CGGTTTGCGC GCCCGCAGCG
GGCACGGCTG CGATCGTCAC TACGACCGAC GGGACAACCA TCGACAACGC ATCCCTCGCA
AGCATCCGTG CGACTGGAAC CCAGGCTAAC GCTTCGGTAT CGATCACCGG CACCAGCATC
ACCAACCGCG CCACGACAGC GGTCAGCGGT GTGCAGGCGC AGGTCAATGG CGGCGCCGGC
TCTGCAACCG TTACGTTCGC CGGTGGCACC AGCAACATCA CGATGGCAGG CAGCGGTACG
CTCGACGGCG TTGCGGTGTT GAACAACACA CCCGGCCAGT CGAGCATTCT CGTCAATGCC
GGCACCACGC TGAACATCGA CAACCCACTG TCGGGCAACG ACCGCGACGG CCTGGACATC
AACGCATCCG GGGGCGGCGA CGCCACCATC GTCCATCAGG GCGCGGGGAC GATCTCCACC
GCGGGCGGCA GCGGCCTCAG GGCCCGCACC AGCGGCGCCG GGAATGTCAC GGTGCAGGCC
GCCGGCGGGA TCACACTGAA TGTCGACAAC ACCAACGGCG TTGCCGACCC GGACGACCCC
GGCGTGGAGG CGGGGCCGGC CAACCATGCG GGGATTCACG CGAAGGCTTC GGGAAGCGGT
GCCATCAACG TCGATACCGC GGCGATGGTC CGTGCGATTG CCACCAACGC GTTCGGCATC
CTTACCGAGG GCAGCAGCGG CGCCACGCTG GTTCACAACA GCGGCGCGCT GACCTCGGAC
GGTCTGAACG GCTTCGGTAT CCGGTCGACG GCGACCACCG GCAGCATCGA GATCCGCAAC
GAAGGTGCTA TTACAACGAC AGGTCCGGCG GCGCACGGGA TCTACGCGAA CAGCAGTTCG
GGCGCCATTA CGGTCGACAA CCGGGCGCCG ATCGCCGTGG GCAGCACAGC AAACGCAGAT
GGCTCGCGCG GCATCAACAT CATCGCGCGC GGTGCCGGCG CGGTGAACGT CACCGGTACC
GGCGATATCA CGGTGCAGGG CAATGTGCAG TCGCAACGCG GGTCCGGCAT CATCATCAGC
GCCGAGCAAG GGGACATCTC CGTCGCGTAC AGCGGTGGCA TCTCCGTGCG TGGCTTCGGC
GCCGGCGGCA TACGTGCGGA CACAGCCGGC GGCAATGTCT CGGTGAACTA CACAGGCAAC
CGCATCGAGA CATTCCACTC CAATGCCAAC GGCATCTATG CCACGGCAAG GTCGGCCACC
GGCACGGTGG ACATCGCGGC ACAGGGCACC ATCGTCACGC ACTCGGACAA CGGCTCGGGT
GACGGCAGCG GTGTCGCCTC GTTTGGCCTG CAGGGCGTCA GCCAAGGGGG CAATGTGCGC
GTATCGTTCG CCGGCCCGAC AATCGATGTC AACGGTTCTG GCGCGGCGAT CCTGGCGGCC
AATGCTTACG ATGGCACGGG ACTGGGCACG GTGACCGTGG ACAACGGCGG CGCGTTGATC
GCTCGCGGCG ACCGTCAGCA GGGCATCCAT ACGCGCTCGC TCACCGGCGA GCAGACCATC
ACCAATACCG CTGCTATACA GACTTCAGGG CCGACCGCCA GCCAGGCCAT TCTTGCCGAG
GGCACGGGCG CCGCAGCGAT TCACATCGTC AACAGCGGCG CATTGACCGC GTCAGGCGAC
AATGCATCCG GCATTGATGC GCAGACGGCC GGCGGTACGG TCGACATCCG CAACAGTCAG
ACCATCGCAG CCGGATGGGG GTCGAGTGCA GGCATACAGA CCGCCGGAGC GTCGCAGACC
ATCGACAATA CCTCTGCAGT CGGCGCGCTG AGCGATGTCG CGATACGCGC CGATGCGAAC
GGATCGGCTG GAACCCTGCT ATTGAGCAAC AGTGGGCAGA TTACCGGGAC AGTCACGGCA
GCAAGCTCCG CCGTCACGAT GACCAATGGC GGCACCTGGA ACCTGCGCGC ATTCAGTGAC
TCGACTGGCA CCGGTACGCG CGACAGGTGG GCCGTGGCGG CCAGCAACCT CGGGACGAAC
GCTGCGAACA GCATCGTGAA CAGCGGCAGC GTCGTGCTGG CCGCGCAGCC GGGCGCTACG
CTGCTTTCAC CCGCCGCGGC CACTGTCAGC TTCGACGCGG CCGGCGCCTA CCTGCCGTTC
GGGCAGGCTG CCAATGCACC CACGCAGGGT GGGGCGGTGC AGGGCCAGAT ACTCGGCGTG
CGCACTTTCA CGAACGGCGG CGTGCTTGAC CTCACGGGCG GGGCCCGTGT GGCGGGCAAT
GTGCTGGTCA TCACGGGCGG GCAGACTGCC GGTCAGGACG GCGCTGGCGT GTTCATTTCC
AACGGCGGCG TGCTGAAGCT CAACACGGTA CTGAATGAAG GCGCTGCGAA CAGCAAGTCA
GATGTCCTCG TGGTCGATGC GACGAGCACC GGCGCCGGCG GGCCTACGCG CCTGCGCATC
AACAATGTCG GCGGAGCCGG TGCGGTGACT CAGGGCAACG GGATCGGCGT GGTCGAGGTC
CTGAACACGG CGCCGGGCGC GTCGGCCCCG AACGCGTTTA CGCTCGACGG GCGCGCGGTG
GCTGGTGCGT ATGAATACCG GCTGTTCCAG GGCGGTGTCG ACGGTAGCCA GGCTGGCTCC
TGGTATCTGC GATCGATGCA AATGCCGCCG CCCGCGCCGC CGACGCCGCC AGAGCCGCTG
TTTCGCCCTG AAGTGGCGGC GTATCTTGCC AACCAGCGCC TGACAGGGCA GATGTTCGTG
CACAGCCTGC ATGACCGGCT TGGCGAGCCA CAATATGTCG AGGGGCAGGG CTTCGATCCC
GCCGGCGACA AGCCGCGCTC CGGCTGGCTG CGCGTGGTTG GAAAATGGGA AGGCAGCCGG
AGTGCGGATG GCGTCTTCAA GACCAGCACC GACTCCTTTC TGCTGCATGG TGGTACCGAA
CTCGCCAGAT GGAATGTGTT CGGCGAATCG GACCGCGGCC ACCTCGGGCT GATGGGCAGC
TATGGCATGG CCGATTCCGA CGCGAGCGCG CAAGGCAACC CGTTCTCCGC ACGCGGCAAG
GTGGAAGGAT GGAGCATCGG CGCCTACGGC ACGTGGTACC AGAACGATGA GAAGAAACTT
GGCACCTATG TCGATTCCTG GCTTCAGTAC GGATGGTTCA CGAACCGGGT AGAGGGCGAC
CTGCTGCCGA CCGTGCGCTA CCACGCGCGT GGCTGGGCTG CCTCGGGCGA GGTCGGCTAC
GCCACGCCGC TGCGCAATGA CTGGATCCTC GAACCACAGG GACAGGTGAT CTACGTCGGC
TACAACGAAG ATGACATCAC GGAACAGAAC GGCACGCAGA TCGGCGGCGC CGATTCACAC
GGCTGGATCA CGCGGCTGGG CGCGCGGGTG CATCGGACCT ACGTTCGCGA GGATGCTCGC
AAATGGCAGC CGTACATGAC GCTCAATTGG TGGCACACGA GCGTGAGCAG CAGTATCCGG
TTCAATGATT TGCCGGTCGG GAGTTTGTAC CCGAGCAACC GCTACGAGCT GAAGCTCGGT
GTCAATGCGG ATCTTGGCAA GCGCTGGACC GGGTGGAGCA ATGTGTCCGG GGCTTGGGGC
GCGCAGAGTT TTTATCAATA TGCGGTGCGG GTTGGGGTGA AGTACACGTG GTAG
|
|---|
| Protein sequence | MQRCSRFRSC TCAPPFRLRP LWAAINRSAI ISPHLSIRAS IILAAHAGTL LFIAMDDAHG
QACGTLSGLR TAGAVCAPAA GTAAIVTTTD GTTIDNASLA SIRATGTQAN ASVSITGTSI
TNRATTAVSG VQAQVNGGAG SATVTFAGGT SNITMAGSGT LDGVAVLNNT PGQSSILVNA
GTTLNIDNPL SGNDRDGLDI NASGGGDATI VHQGAGTIST AGGSGLRART SGAGNVTVQA
AGGITLNVDN TNGVADPDDP GVEAGPANHA GIHAKASGSG AINVDTAAMV RAIATNAFGI
LTEGSSGATL VHNSGALTSD GLNGFGIRST ATTGSIEIRN EGAITTTGPA AHGIYANSSS
GAITVDNRAP IAVGSTANAD GSRGINIIAR GAGAVNVTGT GDITVQGNVQ SQRGSGIIIS
AEQGDISVAY SGGISVRGFG AGGIRADTAG GNVSVNYTGN RIETFHSNAN GIYATARSAT
GTVDIAAQGT IVTHSDNGSG DGSGVASFGL QGVSQGGNVR VSFAGPTIDV NGSGAAILAA
NAYDGTGLGT VTVDNGGALI ARGDRQQGIH TRSLTGEQTI TNTAAIQTSG PTASQAILAE
GTGAAAIHIV NSGALTASGD NASGIDAQTA GGTVDIRNSQ TIAAGWGSSA GIQTAGASQT
IDNTSAVGAL SDVAIRADAN GSAGTLLLSN SGQITGTVTA ASSAVTMTNG GTWNLRAFSD
STGTGTRDRW AVAASNLGTN AANSIVNSGS VVLAAQPGAT LLSPAAATVS FDAAGAYLPF
GQAANAPTQG GAVQGQILGV RTFTNGGVLD LTGGARVAGN VLVITGGQTA GQDGAGVFIS
NGGVLKLNTV LNEGAANSKS DVLVVDATST GAGGPTRLRI NNVGGAGAVT QGNGIGVVEV
LNTAPGASAP NAFTLDGRAV AGAYEYRLFQ GGVDGSQAGS WYLRSMQMPP PAPPTPPEPL
FRPEVAAYLA NQRLTGQMFV HSLHDRLGEP QYVEGQGFDP AGDKPRSGWL RVVGKWEGSR
SADGVFKTST DSFLLHGGTE LARWNVFGES DRGHLGLMGS YGMADSDASA QGNPFSARGK
VEGWSIGAYG TWYQNDEKKL GTYVDSWLQY GWFTNRVEGD LLPTVRYHAR GWAASGEVGY
ATPLRNDWIL EPQGQVIYVG YNEDDITEQN GTQIGGADSH GWITRLGARV HRTYVREDAR
KWQPYMTLNW WHTSVSSSIR FNDLPVGSLY PSNRYELKLG VNADLGKRWT GWSNVSGAWG
AQSFYQYAVR VGVKYTW
|
|---|
| |