Gene PMN2A_1094 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMN2A_1094 
Symbol 
ID3606481 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. NATL2A 
KingdomBacteria 
Replicon accessionNC_007335 
Strand
Start bp1593829 
End bp1595886 
Gene Length2058 bp 
Protein Length685 aa 
Translation table11 
GC content31% 
IMG OID637687964 
ProductTPR repeat-containing protein 
Protein accessionYP_292287 
Protein GI72382932 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCTTT CTAGTCAAGA TGGAGAAGTA AAGAAAAAAG TCACTGAAAT AAAAACATTC 
TCCGTTCCAT TTGCTTTAGG AGAAATCAAA AAAAATATTA CTATTACTAC GAACACTCCT
TCCAAACCGT CTAAAGAACA AATAATTAAT CAAGCATTGA AGTTTCATTC ACAAGGCAAT
ATTTCAGAAG CAGCAAAACT TTATCAATAT TTTATTGATA AAGTTTTCAA AGATCACAGG
GTTTTTTCTA ATTATGGAAT AATTTTAAAA AGTCTAGGCA AATTACAAGA AGCAGAATTA
TCTACTCGCA AAGCAATTGA AATTAAACCT GATTACGCAA AAGCGCATTT AAATCTGGGA
ATCATATTGA GTGATCTTGG TAAATTAGAA GAAGCAGAAT TGTCATACCG CAAAGCAATT
GAACTGAATC CTGATTTCGC AGAAGCACAT TACAATTTGG GAATCATATT GAGTGATCTT
GGCAAATTAG AAGAAGCAGA ATTGTCATAC TGCAAAGCAA TTGAACTTAA CCCTAATTTC
GCAGAAGCAC ATTCCAATCT GGGAAACATA TTAAAAGATC TTGGCAAATT ACAAGAAGCA
GAATTGTCAT ATCGCAAAAC AATTGAACTT AATCCTGATT TCGCAGACGC TCATTACAAT
TTGGGAGTCT TATTGAAAGA ACTAGGCAAA TTAGAAGAAG CAGAATTGTC ATACCGCAAA
GCAATTGAAC TGAATCCTGA TTTCGCCAAT GCTCATTACA ATCTGGGAAT CATATTGAAA
GATCTTGGCA AATTAGAAGA AGCAGAATTG TCATGCCGCA AAGCAATTAA AATCAAACCT
GATTACGCAG ACTCTCATTA CAATTTGGGA GTCTTATTGA AAGAACTAGG CAAATTACAA
GAAGCAGAAT TGTCATACCG CAAAGCAATT GAACTTAATC CTGATTTCGC CAATGCTCAT
TACAATCTGG GAATCATATT GAAAGATCTT GGCAAATTAG AAGAAGCAGA ATTGTCATGC
CGCAAAGCAA TTAAAATCAA ACCTGATTAC GCAATAGCAT ACTATTCAAT ATCATTAATT
AAATATTCTG ATGAGAATAA TATATGGCAG GATCAACTCT TTTCTAAAAA TATCTTAATT
AATAAATCCC AAGAAGATCA AGTTTATATT TACTTTGCAA GAGCAAATAT TCTTCATAAG
GAAAAACAAT ACGAAGAGAG TTCTACATAT CTTGATTTGG CGAATGAATT AAAACTTGCT
ATTAAACCAT CTGAATCTAA TAAGTTATTA AGTAAGTCTC AGGCATTATT TATTGAATCT
AATAAAAATG AAATTAATAA AAAAGAACCC AGAAATTCTC CTGAGAGTAT TTTCATTGTC
GGAATGCCTA GAAGTGGTTC TACATTATTG GAATCAATTC TTAGTATGAA CAATGAAGTA
TGTGATCTAG GTGAAATTAA TATTCTAGAG GAATCTTTTC TAGAGTATAA GAAGTCTAAA
AAAGATGCAA ATTTTGCTGA ACTTTATGGG GAAAAAGTAA ATAATCATAC TGAGTTGAAC
ATTGCAACTA ATAAAAACTT ATATAATTAT CAATACACAG GTATTATTGC TAAAAGAATA
CCAAACGCAA AAATTATTCA CTGCTATAGA AATCCTTTAG ATAATATTCT TTCAATTTAC
CGAACACATT TTGCTAAAGG AAATGAATAT TCCTCATCCC TAGTTGATTG CGTAAGAATT
TATCTAGATC AAGAAGAAAT TATGACTCAA TATAAGAATA GATTTAAATC AACAATTTAT
GACTTAAATT ATGACTCATT AGTTAGCAAT CCAAATAAAG AAATCAAATC TTTGATCTCT
TGGTTAGGTT GGAAATGGGA AGATAAATAT CTATCGCCTC ATCTTAATCC ACGCTCAGTT
TCAACAGCAA GCAATGTTCA AGTTCGTTCC CCAATTAATT CAAAATCAAT TGGTGGATGG
AAGAACTACA AAGATATGCT GAAACCTGCT ATTGAAATCC TTACTCAAAC TGATAGATAT
CAAGACATAA CCTTATAA
 
Protein sequence
MDLSSQDGEV KKKVTEIKTF SVPFALGEIK KNITITTNTP SKPSKEQIIN QALKFHSQGN 
ISEAAKLYQY FIDKVFKDHR VFSNYGIILK SLGKLQEAEL STRKAIEIKP DYAKAHLNLG
IILSDLGKLE EAELSYRKAI ELNPDFAEAH YNLGIILSDL GKLEEAELSY CKAIELNPNF
AEAHSNLGNI LKDLGKLQEA ELSYRKTIEL NPDFADAHYN LGVLLKELGK LEEAELSYRK
AIELNPDFAN AHYNLGIILK DLGKLEEAEL SCRKAIKIKP DYADSHYNLG VLLKELGKLQ
EAELSYRKAI ELNPDFANAH YNLGIILKDL GKLEEAELSC RKAIKIKPDY AIAYYSISLI
KYSDENNIWQ DQLFSKNILI NKSQEDQVYI YFARANILHK EKQYEESSTY LDLANELKLA
IKPSESNKLL SKSQALFIES NKNEINKKEP RNSPESIFIV GMPRSGSTLL ESILSMNNEV
CDLGEINILE ESFLEYKKSK KDANFAELYG EKVNNHTELN IATNKNLYNY QYTGIIAKRI
PNAKIIHCYR NPLDNILSIY RTHFAKGNEY SSSLVDCVRI YLDQEEIMTQ YKNRFKSTIY
DLNYDSLVSN PNKEIKSLIS WLGWKWEDKY LSPHLNPRSV STASNVQVRS PINSKSIGGW
KNYKDMLKPA IEILTQTDRY QDITL