Gene PMN2A_1093 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMN2A_1093 
Symbol 
ID3606480 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. NATL2A 
KingdomBacteria 
Replicon accessionNC_007335 
Strand
Start bp1591659 
End bp1593704 
Gene Length2046 bp 
Protein Length681 aa 
Translation table11 
GC content33% 
IMG OID637687963 
ProductTPR repeat-containing protein 
Protein accessionYP_292286 
Protein GI72382931 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.353622 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAATTGTA GAATTACTGA ACTTGTAAGT TCGAAAAAAG TTTTGACATC TCGTGATAAA 
GATCAAGGAA AAAAGAAAAT CAAGAATGTT AAAACATACC CAGTTCCATT CACTTTAGAA
GAAAAAAAGG AAAATATTAC TATTAATACA AACACGCCTT CTCAACCTTC TAAAGAACAA
ATAATCAATC AAGCAATTGA ATTTCATTCA CAAGGAAATA TTCCAGAAGC GGCAAAATAT
TATAAAAATT TCATCAATAA AGGATTCAAA GATGAGAGAG CTTTTTCTAA TTATGGAGTC
ATATTAAAAA GTCTTGGTAA ATTAAAAGAA GCAGAAATAT CAACTCGTAA AGCAATTGAA
ATTAAACCTG ATTTCGCAAA GGCTCATTAC AATCTGGGAA ATATATTGAA TGATCTGGGT
AAATTAAAAG AAGCAGAAAT ATCAACTCGT AAAGCAATTG AAATTAAACC TGATTACGCA
GATGCTTATT CCAATTTGGG AAATATATTG AATGATCTGG GCAAATTACA AGAGGCAGAA
TTGTCATATC GCAAAGCAAT TGAAATTAAA CCTGATTACG CAGAGGCTCA TTACAATTTG
GGAAACTTAT TGAAAGAGCT AGGCAAATTA CAAGAAGCAG AATTGTCATA TCGCAAAGCA
ATTGAAATTA AACCTGATTT CGCAGAGGCT CATTACAATC TGGGAAATAT ATTGAATGAT
CTGGGCAAAT TACAAGAGGC AGAATTGTCA TATCGCAAAG CAATTGAAAT TAAACCTGAT
TTCGCAGAGG CTCATTACAA TCTGGGAAAT ATATTGAATG ATCTGGGCAA ATTACAAGAG
GCAGAATTGT CATATCGCAA AGCGATTGAA ATTAAACCTG ATTTCGCTGA GGCTCATTAC
AATTTGGGAA ACTTATTGAA AGAGCTAGGC AAATTACAAG AAGCAGAATT GTCATATCGC
AAAGCGATTG AAATTAAACC TGATTTCGCT GAGGCTCATT ACAATTTGGG AAACTTATTG
AAAGAGCTAG GCAAATTACA AGAAGCAGAA TTGTCATATC GCAAAGCGAT TGAAATTAAA
CCTGATTACG CAGAGGCATT TTGGAATCTT TCATTACTTG AACTACTTCA AGGTGACTAT
AAAAATGGTC TAGAAAACTA TGAATTTAGA TTCAAAAAAA AGAAGCCTGC TATTCCTCAC
TGTAAGACAA AAGTCCAAAG GATAAATAAT CAAAAACTAC AAAAAGGAGA AAAGCTCTTA
GTCATTAGCG AACAAGGTTT AGGCGATACT CTTCAATATA TGAGATATAT TCCTTACCTT
AGAAATCAAG AACTCAAAAT TTCTTTTTGT GCTCAAACAA AACTACATTC ATTGATCCAA
GCCTCAGGGA TTGATCAGAA TCCATTAACG CCAGAACAAG CTGAGACAAT TTCAGAAGGG
CAATGGAGTT CATTATTATC TTTACCTAGA TATCTAGAGA TAAATCCCCA AAAACCAATC
ATTTCTGAAC CATATATCTT TTCCACTAAT CAACTAAAAA AGAAATGGAA AAACATACTC
TCTAAAGAGA AAAGACCAAT CATTGGTATT AACTGGCAAG GGAATCCAAA TATGGAAAAG
ACTTATCAAG GACGATCAAT TCCTCTTGAA ACTTTTGCCA CTCTTGCTAG GAACAATAAT
TTTAAATTAC TTTCACTACA AAAAGGTTTT GGTTCAGAGC AACTTGAAAA ATGCTCTTTC
AGAAATAAGT TTGTTAACTG CCAAGCTCAA ATTGATGAGA CTTGGGATTT TCTTGAAAAT
GCTGCCATAA TTGAGAACTG TGATTTAATC ATTACTTGTG ATACTTCGAT TGCTCATTTA
GCTGGAGGAA TGGGTAAAAA AGTTTGGTTA CTGCTAAAAG ATATTCCTTT TTGGACTTGG
GGACTTGAAA GGGAGAATAC ATTTTGGTAT CCATCGATGA GATTATTCCG TCAAAAAGAG
CGAAATAATT GGCAAGAGGT TATGGAGAGA GTATTAATGG AAATTACAAA AGAAAAAAAT
TACTAA
 
Protein sequence
MNCRITELVS SKKVLTSRDK DQGKKKIKNV KTYPVPFTLE EKKENITINT NTPSQPSKEQ 
IINQAIEFHS QGNIPEAAKY YKNFINKGFK DERAFSNYGV ILKSLGKLKE AEISTRKAIE
IKPDFAKAHY NLGNILNDLG KLKEAEISTR KAIEIKPDYA DAYSNLGNIL NDLGKLQEAE
LSYRKAIEIK PDYAEAHYNL GNLLKELGKL QEAELSYRKA IEIKPDFAEA HYNLGNILND
LGKLQEAELS YRKAIEIKPD FAEAHYNLGN ILNDLGKLQE AELSYRKAIE IKPDFAEAHY
NLGNLLKELG KLQEAELSYR KAIEIKPDFA EAHYNLGNLL KELGKLQEAE LSYRKAIEIK
PDYAEAFWNL SLLELLQGDY KNGLENYEFR FKKKKPAIPH CKTKVQRINN QKLQKGEKLL
VISEQGLGDT LQYMRYIPYL RNQELKISFC AQTKLHSLIQ ASGIDQNPLT PEQAETISEG
QWSSLLSLPR YLEINPQKPI ISEPYIFSTN QLKKKWKNIL SKEKRPIIGI NWQGNPNMEK
TYQGRSIPLE TFATLARNNN FKLLSLQKGF GSEQLEKCSF RNKFVNCQAQ IDETWDFLEN
AAIIENCDLI ITCDTSIAHL AGGMGKKVWL LLKDIPFWTW GLERENTFWY PSMRLFRQKE
RNNWQEVMER VLMEITKEKN Y