| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMN2A_0636 |
|---|
| Symbol | |
|---|
| ID | 3606013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. NATL2A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007335 |
|---|
| Strand | + |
|---|
| Start bp | 1123747 |
|---|
| End bp | 1125309 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637687498 |
|---|
| Product | putative carotenoid isomerase |
|---|
| Protein accession | YP_291830 |
|---|
| Protein GI | 72382475 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02730] carotene isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAAT TATCAAATAA AACAAAAGAT TCTTGTAATT GGGATTCGAT AGTTATTGGT
TCCGGTCTGG GTGGTTTAGT AACTGCAAGT CAACTAGCAA GCAAAGGTGC AAAAGTGCTT
GTGCTGGAAC AGTATAAGAT TCCTGGTGGA AGTGGTGGAT CATTTAAAAG AAAAGGATTT
ACTTTTGATG TTGGAGCATC AATGATCTTT GGGTTTGGTA ATAAGGGATA CACAAATTTA
CTAACGCGAG CTCTTAAAGA TGTTGGTCAA AAATGTGAAA CGATCCCTGA CCCAACACAA
TTGGCATATC ATCTACCCAA TCAATTAGAA ATTTCAGTTG ATAGAGATTA TCAAAAATTT
ATTACCAAGC TAATAAATTT ATTTCCCCAT GAAGAGAAAG GAATAAAACA TTTTTACGAA
ACATGTTGGG ATGTATTTAA TTGTCTAGAT TCAATGCCTT TACTTTCAAT AGAGGATCCT
GCATATCTTA TGAAAGTTTT TTTTAAATCA CCTTTATCTT GTCTTGGATT GGCTAGGTGG
TTGCCAGTAA ATGCAGGTGA TGTTGCCATG CGATATATTA AAGATCCTGA TCTTTTAAGA
TTTATAGATA TTGAATGTTT CTGCTGGTCA GTTATGCCTG CCAACTTGAC TCCTATGATA
AATGCAGGAA TGGTCTTTTC TGATAGGCAT TATGGAGGTA TTAACTATCC CAAAGGAGGT
GTAGGAGTTA TTGCAGAAAA GTTAGTGAAG GGAATTAAAA ATCTGGGGGG GGAAATCAGA
TATAAATCCA GAGTAAAAAA AATAATTTTT GAGAAAGGAA ATGCCATAGG TGTTTCCCTT
GAAAATGATG AAGAAATTTT CAGTAAAACA GTGGTCTCTA ATGCTACAAG ATGGGATACT
TTTGGTGGTC AGGGGATTAA GAGTCCACTT GTAGCAACAG AGAACAAACC AACTTCTGAG
AAAAAATGGG AAAACAGATA CATCCCCTCC CCCTCATTCT TATCTCTACA TTTAGGAGTA
AATGTAGACT CTATACCTGC TAACACACAT TGCCATCATC TACTTCTCGA TAAATGGGAA
GAAATGGACA AAGAACAGGG AGTTACTTTC GTATCAATAC CAACTCTCTT AGATCCCACA
TTGGCACCTT CAGGTAGCCA TATTGTTCAT GCTTTTACTC CTTCTTCAAT AGATAACTGG
GATGGATTAA GCAATAAAGA ATATCTTGCA AAGAAAAAAG AAGATGGGGA CAAACTTATT
TCAAAGTTAG AGCGATTATT TCCTAACCTA AGTCAAAATA TTCTTCACAA AGAGATAGGA
AGTCCAAGAA CACATAAAAG ATTCCTTGCA AGAAACAAAG GAAGTTATGG ACCAATTCCA
TCAATGAGAT TACCAGGCCT TCTCCCTATG CCATTCAACA CTACTAAGAT TAATGGACTT
TATTGTGTTG GAGATTCGTG CTTCCCTGGT CAAGGTTTAA ATGCCGTGGC TTTCAGTGGA
TATGCATGTG CTCACAAGAT CGGCACAAAG CTTGGTATGA ACAAATGGGA GCTACCAGAA
TAA
|
|---|
| Protein sequence | MTQLSNKTKD SCNWDSIVIG SGLGGLVTAS QLASKGAKVL VLEQYKIPGG SGGSFKRKGF
TFDVGASMIF GFGNKGYTNL LTRALKDVGQ KCETIPDPTQ LAYHLPNQLE ISVDRDYQKF
ITKLINLFPH EEKGIKHFYE TCWDVFNCLD SMPLLSIEDP AYLMKVFFKS PLSCLGLARW
LPVNAGDVAM RYIKDPDLLR FIDIECFCWS VMPANLTPMI NAGMVFSDRH YGGINYPKGG
VGVIAEKLVK GIKNLGGEIR YKSRVKKIIF EKGNAIGVSL ENDEEIFSKT VVSNATRWDT
FGGQGIKSPL VATENKPTSE KKWENRYIPS PSFLSLHLGV NVDSIPANTH CHHLLLDKWE
EMDKEQGVTF VSIPTLLDPT LAPSGSHIVH AFTPSSIDNW DGLSNKEYLA KKKEDGDKLI
SKLERLFPNL SQNILHKEIG SPRTHKRFLA RNKGSYGPIP SMRLPGLLPM PFNTTKINGL
YCVGDSCFPG QGLNAVAFSG YACAHKIGTK LGMNKWELPE
|
|---|
| |