| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_3088 |
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| Symbol | |
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| ID | 3581356 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 3608792 |
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| End bp | 3609973 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637686825 |
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| Product | putative lycopene cyclase |
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| Protein accession | YP_291144 |
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| Protein GI | 72163487 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0644] Dehydrogenases (flavoproteins) |
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| TIGRFAM ID | [TIGR01790] lycopene cyclase family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGAACGAG TGGACGTGGC GATCGTGGGG GCGGGTGCGG CCGGGCTTTC GCTCGCCCAC
CGGTTGGACC GGGTGCTGCC GCACCGGTCC GTGGTCCTGG TGGAGACCCC GGAGGCGGCG
CTCCGGTCTC CCGAACGCAC CTGGTGTTTC TGGGAGGAGG AGACCGGGGA GTGGGATGCG
GCTGTCTGCC ATAGGTGGCA CGCGTTGGCC GTGCAGGGGC CGGACGGGAC CACGTGGCGG
TCCCGCATCC ACCCGCTGGT GTACAAGATG ATCCGCTCCC GGGACTTCGA AGCCCTGGTG
CGGGGCAGTC TGCAGCGGGT CCGTACCCTC CACTGGACGG TCACGGACAT TGTCGACGGC
CCCGGGGAGG CTGTGCTGCG GCTGCGCGGC GCTGACGGCG CGCAGCGGGA GCTTGCCGCG
GGCCTGGTGT TCGATTCCCG GCCGTTGGTG GGCTTACCGG CGGAAGGGGT GACGCTGCTG
CAGCATTTCC GGGGCTGGTT CGTCCGCACT GACCGGCCCC GTTTCGATTC TTCCGCGGCG
GTGCTGATGG ACTTGCGGGT GCCGCAACCG GAGCGGGGGG TCGCTTTCGG CTACCTTCTG
CCGTTTGATG CGCGTACCGC GCTCGTGGAG TACACCGAGT TCACGCGGGA GGTGTGCTCG
GACGCGGCGT ATGACGCAGC GCTGCGCGAC TACACCGAGA ACCTTCTCCA TTTGGGGGTG
TTCACGGTCA CCGGTGTGGA GCAGGGGGTG ATCCCGATGA CGAGCGCCCA CCTGCCCGAG
CGGGTGGGGC ACCGCGTGTT CCGGATCGGG ACTGCGGGAG GGGCCACCCG TCCTGCCACG
GGCTACACCT TTGCCGGGGT GCAGCGGCAG ACGCGGCGGA TTGCGGCGGC GCTTGTGGCG
GGTCGGTTTC CGGTCGGCTA TTCGGCGTAC CCGGCTCGCC ACCGGTTTTT CGACGCGGTG
CTGCTCCGCG GCCTCGACGA GGGGGTGGTC GACGGCGCGG AGTTCTTCGC CACCCTGTTC
CGGAGCAATC CGCTGCCGCG CCTGCTGCGG TTCCTTGACG GGTCGAGCCG CCCGTGGGAG
GAGTTGGCGA TCGGTTTGGG CACCCCGGTC GCGGACATGT CCACGGCCTT GTGGCGGCAG
GTGCGCGCTG GCCGCCGGGT CGCGAGCAGT CTTCCCAGGT GA
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| Protein sequence | MERVDVAIVG AGAAGLSLAH RLDRVLPHRS VVLVETPEAA LRSPERTWCF WEEETGEWDA
AVCHRWHALA VQGPDGTTWR SRIHPLVYKM IRSRDFEALV RGSLQRVRTL HWTVTDIVDG
PGEAVLRLRG ADGAQRELAA GLVFDSRPLV GLPAEGVTLL QHFRGWFVRT DRPRFDSSAA
VLMDLRVPQP ERGVAFGYLL PFDARTALVE YTEFTREVCS DAAYDAALRD YTENLLHLGV
FTVTGVEQGV IPMTSAHLPE RVGHRVFRIG TAGGATRPAT GYTFAGVQRQ TRRIAAALVA
GRFPVGYSAY PARHRFFDAV LLRGLDEGVV DGAEFFATLF RSNPLPRLLR FLDGSSRPWE
ELAIGLGTPV ADMSTALWRQ VRAGRRVASS LPR
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