Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_3068 |
Symbol | |
ID | 3580044 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | - |
Start bp | 3584976 |
End bp | 3585872 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637686801 |
Product | rhomboid family protein |
Protein accession | YP_291124 |
Protein GI | 72163467 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.000231601 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCGCCT CTCCCAGTTC TGAACCGACG TCCCAGGCGG TCCCGGTCTG CTACCGACAC CCAGGGCGCG AGACCTATGT CCGGTGCCGC CGGTGCAACC GGTACATCTG CCCGGACTGC ATGCGGGAGG ACTCGGTCGG GTTCCAGTGC GTGGAATGCG TCGCTGAGGG GAACCGGAGT GTGCGAGAGG CGCGCACCGT CTTCGGGGGC AGGATCATCG CCAAGCCCTA TGTGACCTGG GCGCTGCTGG GGCTGATCGG TGCAGTGTTC GCGGCCCAGG TCGTGTCCTC GGGCGGTCTC GTCCGGCTCG GCACCACCGC TGATCCGCTC GTCTACGAGT TCGGGATGTG GGGCGGGGCG GTCCTGGCGT GGCACCAGTG GTACCGCCTG CTCACCGGGG TGTTCCTGCA CGGCGGCCTC ATGCACTTGG CGTTCAACGG GTTCGCGCTG TACGTGCTGG GGCCGCAGTT GGAGCGGTGG CTCGGCCACC TGCGTTACGC GGCACTGTGG GGAGTGAGCG CCCTCGGCGG GTCGGTGCTT GGACTGCTGG TGCAGCCGAC AGTGATGTCG GTGGGGGCGT CTGGGGCGAT CTTCGGACTG TTCGGCGCGG TCTTCGTGTT CGGTAAGCGG CTCAGGTTGG ACACCCGGTT CATCCTGGGC CTGCTTGTCG CCAACCTGTT GATCACCTTC CTGGTGCCGG GGATTTCCTG GACCGCGCAC ATCGGCGGTC TCGTGAGCGG TCTGCTGCTG GGCTTGGGGT ATGCCTACCT TCCGCCGAAG GCGGGCAGGG AGAGCAAGCC GTGGCAGCGC GCGCTCTGGC ACGGAGGGGT CACCGTGGCC TACCTGGTGC TGCTGGGCGT CGCGATAGCG GTGGCACCGA TCGCGTCGCT GGGGTGA
|
Protein sequence | MSASPSSEPT SQAVPVCYRH PGRETYVRCR RCNRYICPDC MREDSVGFQC VECVAEGNRS VREARTVFGG RIIAKPYVTW ALLGLIGAVF AAQVVSSGGL VRLGTTADPL VYEFGMWGGA VLAWHQWYRL LTGVFLHGGL MHLAFNGFAL YVLGPQLERW LGHLRYAALW GVSALGGSVL GLLVQPTVMS VGASGAIFGL FGAVFVFGKR LRLDTRFILG LLVANLLITF LVPGISWTAH IGGLVSGLLL GLGYAYLPPK AGRESKPWQR ALWHGGVTVA YLVLLGVAIA VAPIASLG
|
| |