| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_3031 |
|---|
| Symbol | |
|---|
| ID | 3580098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 3545032 |
|---|
| End bp | 3546705 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637686763 |
|---|
| Product | coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase |
|---|
| Protein accession | YP_291087 |
|---|
| Protein GI | 72163430 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2141] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR03560] probable F420-dependent oxidoreductase, Rv1855c family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGCC CCGGCCGCTT CCTCGGGGGA CCGCTCTTGA CCGACTACGG CCACGAACTG
CGTTTCGGCA CCTTCCTCAC GCCAAGCAAC CAGAATCCCG AACGGGTAGT CGGCCTCACC
CAGCTCACCG AGCAGTCCGG GCTGGACCTC GCCACCTTCC AGGACCACCC CTACCAGTCC
GCGTTCTTCG ACACCTGGAC CCTGCTGTCC TACCTCGCCG CCCGCACCGA GCGGATCACC
CTGGCAGGCA ACGTGCTCAA CCTGCCGCTG CGCCAGCCCG CCGTGCTGGC CCGCAGCGTA
GCCAGCCTCG ACCTGCTCAG CGGCGGCCGT ATCGAACTGG GCTTGGGCGC GGGCGCTTTC
TGGGACGCGA TCGAAGCCAT GGGCGGCCGC CGCCTCACCC CCGGCCAGAG TGTCCAGGCG
CTCACCGAAG CCATAGAGAT CATCCGCGGG ATCTGGAACA CCGAGGAGCG GCGCGCCCTG
CGCATCAACG GCGAGCACTA CCGGGTGGCG GGCGCAAAAC GCGGCCCCGC CCCCGCCCAT
CCCATCGAAA TCTGGCTGGG CGCCTACAAG CCGCGCATGC TCCGCCTGGT AGGCCGCGCC
GCGGACGGCT GGCTGCCTAG CGTGCCCTAC CTCTCCAGCC TGGGCGACCT CGCCCGCGGC
AACGCGATCA TCGACGAGGC CGCCGCGGAA GCAGGCCGCG ACCCCGCCGC GATCCGCCGC
CTGCTCAACA TCAACGGCGT GTTCGCCCGG TCCAACAACG GCTTCCTCAA CGGGCCCGTG
GACCAGTGGG TGGAGGAGCT CGCCGAACTC GCCCTCACCG AAGGGATCAG CGTGTTCCTG
CTCGGCACCG ACCACCCGGA GGCAATCCAG CGGTTCGCCC ACGAGGTCGC CCCCGCGGTC
CGGGAACTCG TCGCCGCGGA ACGGTCCCGC CCGCGTCCCG CGGACGCACC GGGTGCCGCC
CTCGTCACCG AACCTTCCGC CGCCGAACCG GCTTCCAGCC AGGCACCGGC CGCCTCCGAG
CAGGGCCAAT ACGAACGCCT CGGCGTGGCC CCCACCCCCG ACGACGGCAC GCGCCTCCAC
CCGCGCAGCC GGGAACTGCT CGACGAAGAC ACGCGGCCCA GCCGTCCCGA ATCCGGTCCC
GACGTCGCCT ACGACGACGT CTCCCGTGCC CTCGGCCAGC ACCTCATCGA CGTGCACGAC
CACTTGCGCG CCGAACTCCG CCGCCTACGG GAACTCATCG ACCAGGTCCG CGTGGGGACG
CTGAGCGCCG GGGAAGCCCG CTCCGCGATC AACCAGATGA CCCTGCGCCA GCACAACTGG
AGCCTGGGCG CCTACTGCGC CTCCTACTGC CGGGTCGTCA CCCAGCACCA CACCCTGGAA
GACGACTCCG TCTTCCCGCA CCTGCGCGCC CAAGAGGAGG CACTGGAACC CGTCATCGAC
CGGCTCACCG AGGAGCACCA GGTCATCCAC CGGGTCCTCA ACGACGTGGA CCGGGCCCTC
GTCGAGTTCA TCTCCCAGCC GGACGACTTC GCTCCGCTGC AGGAAGCCGT CGACGTCCTC
ACCGACGTGC TGCTGTCCCA CCTCTCCTAT GAAGAGCGGG AACTCGTGGA ACCGCTGGCC
CGCTACGGGT TCTACGAAGG GCAAGTCCGC TCACTGCGCC GCTCCCCCCG GTGA
|
|---|
| Protein sequence | MRRPGRFLGG PLLTDYGHEL RFGTFLTPSN QNPERVVGLT QLTEQSGLDL ATFQDHPYQS
AFFDTWTLLS YLAARTERIT LAGNVLNLPL RQPAVLARSV ASLDLLSGGR IELGLGAGAF
WDAIEAMGGR RLTPGQSVQA LTEAIEIIRG IWNTEERRAL RINGEHYRVA GAKRGPAPAH
PIEIWLGAYK PRMLRLVGRA ADGWLPSVPY LSSLGDLARG NAIIDEAAAE AGRDPAAIRR
LLNINGVFAR SNNGFLNGPV DQWVEELAEL ALTEGISVFL LGTDHPEAIQ RFAHEVAPAV
RELVAAERSR PRPADAPGAA LVTEPSAAEP ASSQAPAASE QGQYERLGVA PTPDDGTRLH
PRSRELLDED TRPSRPESGP DVAYDDVSRA LGQHLIDVHD HLRAELRRLR ELIDQVRVGT
LSAGEARSAI NQMTLRQHNW SLGAYCASYC RVVTQHHTLE DDSVFPHLRA QEEALEPVID
RLTEEHQVIH RVLNDVDRAL VEFISQPDDF APLQEAVDVL TDVLLSHLSY EERELVEPLA
RYGFYEGQVR SLRRSPR
|
|---|
| |