| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2929 |
|---|
| Symbol | |
|---|
| ID | 3580195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 3443167 |
|---|
| End bp | 3444414 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637686658 |
|---|
| Product | polysaccharide/polyol phosphate ABC transporter permease |
|---|
| Protein accession | YP_290985 |
|---|
| Protein GI | 72163328 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCTGGC TTTCGCCCTT CCCACCCCGG ATTCCGCTCG GTGAGGGCTT CGAAGCATTC
AACACGTGGC TCAAAGACCA CTTCGGTGGG CTGTTCGACG TCATCGGCAC CGTCATCAAC
TGGGCGGTCA CCACGCTCCG GGACTTCCTC ACCGAACCCC AGGCCGCCCA GTTGACGGCG
ATCGCCGCCG CCATCCTGGC GGTGCTCCTC GTGCGGGCGC GTCCCATCCC GGTGCTCGTC
ATCGTCGGCA GCACCATTGC CCTGTACGTG GGGCAGGCGA CGTTCGAGCT GGGCAACACG
CTCGTCAACC ATTCACCGCC GCAGCTCTTC CTGTGGGCGA TGCACCTGTT CGGCCAGGAG
AAAGTGGAAT CCAACCTGGT CATCGGGATC GTTGCTCTCA TCGCCCTCGT CGTGGTCGCC
GCCGTCTACC GGATCCGGCT GCCGTTGGTT GCTGCCGTTG CTGGCGGCTG GCTGGCGGTG
ATCCTGTGCG GCTGGCTGCT GTTCGGCGCG ATCCCCGAGG TGATCGGCCA GCCCACAGCC
ATCCTCATGA TGCTGCTGCT CAGCACCCTG GCGTGGGTGG TGGCGGGCTG GAAGCTCGGC
GTGTTCTCCC TGGTGGCGCT CACGCTCGTG ATCAGCATCG AGCAGTGGAG CAACGCCATG
TCGACCCTGG CCCTGGTGCT GGTGGCCAGC CTCATCGCGG TAGTCATCGC CATCCCCATC
GGGATCGTGG CCGCCTACAG CACCGTGGTC AGCCGCATCG TCAAACCGGT GTTGGACCTC
ATGCAGACGA TGCCGGCCTT CGTCTACCTG ATCCCGGCGA TCTTCTTCTT CTCGCTCGGC
GCTGTCCCCG GGGTTGTGGC CACCGTGGTG TTTGCCATGC CTCCTGGGGT GCGCCTCACC
GAGCTGGGCA TCCGGCAGAT CGATAAAGAG GTCGTGGAAG CGGGTGAAGC ATTCGGCGCC
TCCCCCTTCA AGATCCTCAC CGGGATCCAG TTGCCGCTGG CACTGTCCAC GATCATGGCG
GGCGTCAACC AGGTGATCAT GCTCGGCCTG TCCATGGTCG TCATCGCCGG CATGGTCGGC
GCTGGAGGAC TCGGCAACCA GGTCTACCAA GGCATTTCCC GCAACGACGG CGCGCTCGGT
TTCGAAGGCG GTATCGCCGT CGTCATCCTC GCAATCTTCC TGGACCGGCT CACCGCGGCG
ATCACCCGCC GCTCGCCGCA GGCTCGCGCC GAGCGCGCCG CGGCCTGA
|
|---|
| Protein sequence | MSWLSPFPPR IPLGEGFEAF NTWLKDHFGG LFDVIGTVIN WAVTTLRDFL TEPQAAQLTA
IAAAILAVLL VRARPIPVLV IVGSTIALYV GQATFELGNT LVNHSPPQLF LWAMHLFGQE
KVESNLVIGI VALIALVVVA AVYRIRLPLV AAVAGGWLAV ILCGWLLFGA IPEVIGQPTA
ILMMLLLSTL AWVVAGWKLG VFSLVALTLV ISIEQWSNAM STLALVLVAS LIAVVIAIPI
GIVAAYSTVV SRIVKPVLDL MQTMPAFVYL IPAIFFFSLG AVPGVVATVV FAMPPGVRLT
ELGIRQIDKE VVEAGEAFGA SPFKILTGIQ LPLALSTIMA GVNQVIMLGL SMVVIAGMVG
AGGLGNQVYQ GISRNDGALG FEGGIAVVIL AIFLDRLTAA ITRRSPQARA ERAAA
|
|---|
| |