| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2779 |
|---|
| Symbol | |
|---|
| ID | 3582022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 3259198 |
|---|
| End bp | 3260721 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637686503 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_290835 |
|---|
| Protein GI | 72163178 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGGA CGAAGGACCG CGCGGCTCCG AACGCCACAG GGACGCATCC GACCCCGCAG
TCCCCCATCC CCCAGCAGAG CACGTTCCTC GACACCTACC CCGAGTACGC CGACACGGCG
ATACTCGACC ACCTGCGCGC CACCGAATAC CGGTACCTCG ACGCCAAAAA CCACCTCTAC
CTGGACTACA CGGGGGGCGG ACTCCCCGCC GAAACCCAGA TCCAAGCCCA TGCTGACCGG
GTACGGGCCA ACTGCTTCGG CAACCCCCAC TCCGCCAACC CCACCTCCGC CGCCTCAACC
GAACTCGTGG AACAGGCCCG TGACGCGGTA CTGCGGTTCT TCAACGCCTC CCCCGACGAG
TACACGGCCA TCTTCACCCC CAACGCCACC GGGGCCTGCC GTCTCGTCGG CGAGGCGTAC
CCGTTCCAAC CCGGAACCCG GTTCGTGCAG CTCGCCGACA ACCACAACTC CGTGAACGGC
ATCCGCGAAT TCGCGCGCCG CAGAGGAGCA CAGATCGACA CGATCGACGT CACACCTCCC
GAACTGCGCG CAGAAGAACA CGAGATTCAC ACCGCGCTCG ACCGCCCCCC ACCCCCGCCC
CTCCGGAACC GGGAGGACAA CGGCGGGCGG GCCGGACTAT TCGCCTACCC GGCGCAGAGC
AACTTCTCCG GCGTGCAACA CCCGCTGGAA TGGATCGACA TCGCCCACCG CTACGGCTTC
GACGTGCTGC TGGACGCGGC CGCCTACGCG CCCGCCAACC GGATCGACCT CGCAGAAATC
CACCCCGACT TCATGCCTGT GAGCTGGTAC AAGCTCTTCG GGTATCCGAC CGGCCTGGGC
TGTCTCATCG CACGCCGTGA AGCCCTTGCC CGACTGCAGC GGCCGTGGTT CTCCGGAGGC
ACCATCCAAG CGGTCAGCGT GCAAGGCGAC TGGTTCCACC CGCTGGACGG CGCCGCAGCC
TTCGAAGACG GCACCGTCAA CTACCTGTCC ATTCCGGATG TGGAAGTGGG ACTGCGCTGG
CTGTCCGCGA TCGGCATCGA CACCGTGCAC ACCCGGGTGC AGTGCCTCAC CGGCTGGCTG
CTCGACCAGC TGGTCCGCGC CCGCCACGCC ACGGGCACGC CGCTCGTCCG CATCTACGGG
CCCACCACCA CGGACGCGCG CGGCGGCACG ATCGCGTTCA ACTTCCTCGA CCCGGCGGGG
CGCGTCGTCG ACGAACGGGT GGTGGCCCGT GACGCGGCAC GCGCCACCAT CTCGCTGCGG
ACCGGATGCT TCTGCAACCC CGGGGCAGGG GAGGCGGCTT TCCGGCTCCG CCGGGAAAAC
CTGCGACTGC CCGGACTGCA GTTTCCCGCC ACAGTCGACG AGGTGCTCGC TGCCATGGGC
ATGCCCACGG CCGGAGCGAT CCGCGTCTCC TTCGGCCTAG CGAGTACCCT GGATGATGGA
GCGCGTTTTC TGGACTTCGC GTTCTCCACC TACCTGGACC GCTTCCCCGA CACCAGCGAC
CTGCCCGCAC GGGTGGCGTG CTGA
|
|---|
| Protein sequence | MKRTKDRAAP NATGTHPTPQ SPIPQQSTFL DTYPEYADTA ILDHLRATEY RYLDAKNHLY
LDYTGGGLPA ETQIQAHADR VRANCFGNPH SANPTSAAST ELVEQARDAV LRFFNASPDE
YTAIFTPNAT GACRLVGEAY PFQPGTRFVQ LADNHNSVNG IREFARRRGA QIDTIDVTPP
ELRAEEHEIH TALDRPPPPP LRNREDNGGR AGLFAYPAQS NFSGVQHPLE WIDIAHRYGF
DVLLDAAAYA PANRIDLAEI HPDFMPVSWY KLFGYPTGLG CLIARREALA RLQRPWFSGG
TIQAVSVQGD WFHPLDGAAA FEDGTVNYLS IPDVEVGLRW LSAIGIDTVH TRVQCLTGWL
LDQLVRARHA TGTPLVRIYG PTTTDARGGT IAFNFLDPAG RVVDERVVAR DAARATISLR
TGCFCNPGAG EAAFRLRREN LRLPGLQFPA TVDEVLAAMG MPTAGAIRVS FGLASTLDDG
ARFLDFAFST YLDRFPDTSD LPARVAC
|
|---|
| |