| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2450 |
|---|
| Symbol | |
|---|
| ID | 3581869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 2877461 |
|---|
| End bp | 2880319 |
|---|
| Gene Length | 2859 bp |
|---|
| Protein Length | 952 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637686166 |
|---|
| Product | DEAD/DEAH box helicase, N-terminal |
|---|
| Protein accession | YP_290506 |
|---|
| Protein GI | 72162849 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1061] DNA or RNA helicases of superfamily II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGCA GAGTCGCATC GGCCCGCTGG CCGGGTGGAT TTCGGTCGTA CCAGCGGCAC
GCGCTGGAAG CGTTGGATGC CCGTTGGGCG TCGGGGGAAC GGCGTGCGTG GGTGGTGCTG
CCTCCCGGAG CGGGCAAGAC TCTCGTCGGA TTGGAAGCGG CGCGGCGGCT TGGCCACCGC
ACGGTGGTGT TCGTCCCCAA CACCGCGGTC CAAAACCAGT GGCTCGCCCT GTGGCGGAAG
TTCGACCGCC CCGACGGGTG TACTGCGGGA ACCCGGCGCT CCCTCGACCA CGACGTCACC
GTGCTGACCT ACCAGTCGCT AGCCGTGTTC GACCCGGATG CGGAGACCGA CGAAGAGGGA
AATGAACTGC CTCCCCTGGG TCGGCTGCAC GGCAACGGCA GCGCCCTGCT CGAAGCCCTG
CGTGCGGCGG GGCCGGTCAC CGTCATCCTC GACGAGTGCC ACCACCTCCT GCAGATGTGG
GGGCGGCTGC TCGCCGACGT GCTGCGGGAA CTCCCGAACG CCCACGTCCT CGGCCTCACC
GGCACCCCGT GGGAGACCCT AACGGACAGT GAGGCCGTAC TGGTTCGGCG CATGTTCGGC
GCCCCGATCC GCGGGGCTTC CATTCCCGCC CTGGTCCGCG ACGGCTACCT CGCCCCCTTC
GCGGAACTCG TCTGGATCAC CGAACCCACA CCCGCCGAAC AGGACTACAT CGCCGAGCAA
GGACTGCGGT TCACGGAACT CTGCACCGAC CTGTTCTCCC CCGGTTTTGC CAGCACCGAC
TTCGTGACCT GGCTGCGCCG CAGGTTCTGC GAGCGTGTCA CCGACACGGG GGAGCAGGCG
AGCTGGGCGC AACTGGCCGC GCAGGAACCG GAACTCACCG ACGCAGCCCT GCGTCTGCAC
CATGCCGGGC TGTTCATGCT GCCGCCCGGC GCCCGTCTCC TGGAGCGGCA CCGCAGCGCC
CCCACGGCTG ACGACTGGAT GGTGCTGATC AGCGACTACG TCCTCAACTG TCTGGCCCCC
CACCAGGGCA AAGAGCTCGT CGCCCCGGAG CGGGCCGCCG ACGACCGGGA CACGCAAGCG
TGGGAGCGGA TTCGCACCGC GCTGCGGGCG ATCGGATACA CACTGACCCG GCACGGCATC
CGCGGCGGCC GTTCCCCCGT GGACCGGGTG CTGGCTCGGA GCTCCGCGAA ATCGCAGAGC
ACTGTGCAGA TCATCGCAGC TGAGTCCGCG TTCTTGGGTT CGCGGCTGCG GGCCCTGGTG
CTGTGCGACC ACGAACGGGC CAGTGTGCGC CCTTCACCGC GGTTGCGCGA CGTGCTCGAC
GACCAAGCTG GGTCGGCGTG GCTGCAGTTG GAGCTGTTGG CCACAGACGA GCGCACCAGC
GCCCTGCATC CCATGCTGGT GACCAACCGC ACCGTGGCCG CGGCCCCGGA CACCGCGGAC
GATTTCATCG CGTTCGTCAA GGAGCGCCGC CCCGCCCTCA ACTTGACCTG TGTGGATACG
GGGTCCCGCG GCTCCCTGGT GCGGATCGAA GGCCGCTGGA CGTCCCGGAC CTGGGCCCGA
CTGGTCACCG AATACTTCGA AGAGGGCCGC TGCCAAGTCC TAGTGGGCAC GCTCGGACTG
CTCGGCGAAG GCTGGGACAC TCCCCGGGTC AACACGATCG TGGACTTGAC GACCGCCACC
ACCCCCACCT CGGTGGTTCA AGGGCGCGGC CGTGCGCTGC GCCTTGACCC GGAGTGGCCG
GAGAAGACCG CGCACACCTG GACAGTGGTG TGTGTCAGCG ACACCCACCC CAAGGGGAGC
GCGGACTGGG AGCGGTTCGT CCGCAAGCAC GAAGGCTACC TGGGAGCGGC TGCTGACGGG
GAAGTGATGA GCGGGGTCGC GCACGTCGAC CCGGCGCTCT CCCCGTATGC GCCGCCGCCG
GTGGACCAGT TCGCGGACAT CAACGAGCGG ATGCTGCGGC GCGCCGAAGA CCGAGAGGAT
ACCCGGGAGC GGTGGCGGAT CGGCTCCCCC TACACGGACG AACTGCTGGC CACGGTCCGG
GTCCGGCCGC AGCAGTATCG GGGAGTGCTG GCGCCCCGCC CGGCAGGCCA GTCCCCGCAA
CCGCCGCCCG CCGTGCCGGG CCGGGCGGGG GTGGACACTG CTGAACAGTT GGCGGTGTCC
CCGCTGTGGA AGATCGTGCT GTCTGTTCCC GTGGTCGCGG CCGCGGTCCT GCTGGTGGTG
ACCGCGTTCG GCCTTCCGCC GTCGGCCGGC CTGGCCGTGG CAGGGGCGGT GGCCGGCGGG
GTCTGCGCCT ACCGGCTGCT GGCCCGGCGG CCGCGGATCC GGCGGGCCGC CCAGCTTTTC
GAGATCGCTT CTGGGGAGCC TGACATTCTC CGGTTCGGTT ACGCCATTGC GGATGCGATG
CATGCGGCGG GGTATTCCCC GGTGGGCGCG GAAGGCCTGC GGTTGGACAT CGACACGGAC
GGCACGTTCC GGCTCACGTT CACCGGCGCC GGGCCTGCCG AAGCCAAAGC CTTCAGCACG
GCCTTGGACG AGGTGATCTC ACCGCTGGTA GGCCAGCCCC GCTACATCAT CAACCGCTAC
CGGATCGAGC CTCCCGCCGA TGCAGCGCAG GCCCAGCGGA TGGGGATGGA CTGGCTGCTC
GGCAAAGCCC CGGAGAACCC CGCGGTGTTC CACGCGGTGC CGGCACTGCT GGGCCGCGAC
CGGCGGGGAG TGGAAGCGTT TGCGCGGGCG TGGAACCGGT GGCTGTCCGC CGGGGAGCCC
ATCTACACCG CGAGCCCGGC GGGGTCCCGG CTGCTGCACA CCTACTACGC CACGGACCCG
TACCCGTCGG AGACAGAGTC CCGGTTCACC TGGCTGTGA
|
|---|
| Protein sequence | MMSRVASARW PGGFRSYQRH ALEALDARWA SGERRAWVVL PPGAGKTLVG LEAARRLGHR
TVVFVPNTAV QNQWLALWRK FDRPDGCTAG TRRSLDHDVT VLTYQSLAVF DPDAETDEEG
NELPPLGRLH GNGSALLEAL RAAGPVTVIL DECHHLLQMW GRLLADVLRE LPNAHVLGLT
GTPWETLTDS EAVLVRRMFG APIRGASIPA LVRDGYLAPF AELVWITEPT PAEQDYIAEQ
GLRFTELCTD LFSPGFASTD FVTWLRRRFC ERVTDTGEQA SWAQLAAQEP ELTDAALRLH
HAGLFMLPPG ARLLERHRSA PTADDWMVLI SDYVLNCLAP HQGKELVAPE RAADDRDTQA
WERIRTALRA IGYTLTRHGI RGGRSPVDRV LARSSAKSQS TVQIIAAESA FLGSRLRALV
LCDHERASVR PSPRLRDVLD DQAGSAWLQL ELLATDERTS ALHPMLVTNR TVAAAPDTAD
DFIAFVKERR PALNLTCVDT GSRGSLVRIE GRWTSRTWAR LVTEYFEEGR CQVLVGTLGL
LGEGWDTPRV NTIVDLTTAT TPTSVVQGRG RALRLDPEWP EKTAHTWTVV CVSDTHPKGS
ADWERFVRKH EGYLGAAADG EVMSGVAHVD PALSPYAPPP VDQFADINER MLRRAEDRED
TRERWRIGSP YTDELLATVR VRPQQYRGVL APRPAGQSPQ PPPAVPGRAG VDTAEQLAVS
PLWKIVLSVP VVAAAVLLVV TAFGLPPSAG LAVAGAVAGG VCAYRLLARR PRIRRAAQLF
EIASGEPDIL RFGYAIADAM HAAGYSPVGA EGLRLDIDTD GTFRLTFTGA GPAEAKAFST
ALDEVISPLV GQPRYIINRY RIEPPADAAQ AQRMGMDWLL GKAPENPAVF HAVPALLGRD
RRGVEAFARA WNRWLSAGEP IYTASPAGSR LLHTYYATDP YPSETESRFT WL
|
|---|
| |