| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2168 |
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| Symbol | |
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| ID | 3580387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 2542322 |
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| End bp | 2543860 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637685871 |
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| Product | pectate lyase |
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| Protein accession | YP_290224 |
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| Protein GI | 72162567 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.108445 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGACGAT CAATTACGCG TCGACTCGCC TCGACGCTAG CCACAGCGGC CGTGGTGACA
GCAGGTCTAA CCCTACCGGT GTCCCCGGCA TCGGCGCAGA CCGGCAGCGC CACCGGCTAC
GCAGCCCTCA ACGGCGGAAC GACGGGCGGT GCGGGCGGAC AGGTGGTCCG AGCCACCACA
GGAACCGAGA TCCACCAAGC CCTGTGCCAG CGGCCCAGCA CCAGCACCCC AATCATCATC
CAGGTCGAAG GAACCATCAA CCACGGCAAC ACCTCCAAGG TGTCCGGACC GGGATGCGAC
ACCGCCAGTG ACAAGATCGA ACTCAAGAAG ATCAGCAACG TCACAATCGT CGGTGTCGGC
AACGGAGCCC TGTTCGACCA GATCGGCATC CACATCCGGG AATCCCGGAA CATCATCATC
CAGAACGTGC ACATCCGGAA CGTCAAGAAG TCCGGATCAC CCACGTCTAA CGGCGGCGAC
GCCATCGGCA TGGAGAAGGA CGTCCGCAAC GTCTGGGTGG ACCACGTCAC CTTGGAGGCC
TCGGGCGGTG AGTCGGAGGG CTACGACGGC CTCTTCGACC TCAAGGACAA CACCCAGTAC
GTCACCCTCT CCTACAGCAT CCTCCGTAAC TCTGGCCGCG GAGGACTGAT CGGATCCAGC
GAGAGCGACC TCTCCAACGG TTACATCACC TTCCACCACA ACCTGTACGA GAACATCGAC
TCGCGGACGC CCCTGCTGCG CGGCGGCGTG GCGCACATGT ACAACAACCA CTACGTGCGC
CTCAACAACT CCGGCATCAA CTCCCGGGCC GGGGCACGCG CCAAAGTGGA GAACAACTAC
TTCCAGAACT CCAAGGACGT CCTGGGCACC TTCTACACCA ACGAGCGGGG CTACTGGGAG
GTCCGCGGCA ACATCTTCGA CAACGTGACC TGGTCCAGCC AGGGCAACGA GAACTACCCT
GCCGGACCTA ACCCGCAGTC CACCACATCG GTGAGCATCC CCTACTCATA CCGGCTTGAC
GACGCCGGCT GCGTGCCGCA GATCGTGAGC CAGACCGCGG GCGCGAACAA GGGCAACCGG
GTCTCCGACG GCAACTGCCG GGCAGAGGAT CCGGGCAACC CCGATCCGGG CAATCCGGAT
CCGGGGAACC CTGACCCGGG CACCCCGCCC GGCGGCACCA ACCTCAGCAT CGGTGCCGAC
GCCGACGGCT CCAGCAAGGC CAGCGGGACC AGCTACAAGA ACGTCATCGA CGGCGACATG
AGCACCTACT GGTCGCCGAG CGGCTCCACC GGCCGCATCT CGGTCAAGTG GGGCTCGAAC
GTGACGGTGT CCGCGATCCA CATCCGCGAG GCGGCTGGGG CCGTGGGCAA CATCGGCTCC
TGGCGGGTCG TCAACAATGA CACCGGCGCC GTCCTGGCCA CGGGAACCGG GGCGGGAGTC
ATCACCTTCA CCCCCACCAC GCTGCGGAAG ATCAACTTCG AGATCCTCAG CTCGAACGGC
ACTCCGCGGG TGGCCGAGTT CGAAACCTAC GCCGGCTAA
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| Protein sequence | MGRSITRRLA STLATAAVVT AGLTLPVSPA SAQTGSATGY AALNGGTTGG AGGQVVRATT
GTEIHQALCQ RPSTSTPIII QVEGTINHGN TSKVSGPGCD TASDKIELKK ISNVTIVGVG
NGALFDQIGI HIRESRNIII QNVHIRNVKK SGSPTSNGGD AIGMEKDVRN VWVDHVTLEA
SGGESEGYDG LFDLKDNTQY VTLSYSILRN SGRGGLIGSS ESDLSNGYIT FHHNLYENID
SRTPLLRGGV AHMYNNHYVR LNNSGINSRA GARAKVENNY FQNSKDVLGT FYTNERGYWE
VRGNIFDNVT WSSQGNENYP AGPNPQSTTS VSIPYSYRLD DAGCVPQIVS QTAGANKGNR
VSDGNCRAED PGNPDPGNPD PGNPDPGTPP GGTNLSIGAD ADGSSKASGT SYKNVIDGDM
STYWSPSGST GRISVKWGSN VTVSAIHIRE AAGAVGNIGS WRVVNNDTGA VLATGTGAGV
ITFTPTTLRK INFEILSSNG TPRVAEFETY AG
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