| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2067 |
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| Symbol | |
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| ID | 3581613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 2420052 |
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| End bp | 2420900 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637685763 |
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| Product | shikimate dehydrogenase |
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| Protein accession | YP_290123 |
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| Protein GI | 72162466 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.358861 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGCGAG CGGCCGTCCT CGGTTCGCCG ATCTCCCATT CCCTCTCGCC GGTGCTGCAC
ACGGCGGGCT ATACCGCGCT CGGTATCGCG GACCAGTGGC ATTACGGCCG TTACGAATGC
GACGAGCACG GTCTCGCCGC GTTCCTTGAC CAGTGCGACG AGTCCTGGGC GGGCCTCTCG
TTGACCATGC CGCTCAAAAA GGTCGCGCTG ACCCTCGCAG ATGAGGTGGA GGACACGGCC
GCAGCGGTCG GGGGCGCGAA CACCATCATC TTCGACAAGG GGCGGCGGCA CGCCTACAAC
ACCGACGTCA CGGGGATTAC CGAGGCGCTG CGTGAGGCGG GCATCCACCG GCTTGACACG
GTCACCATCC TGGGGGCGGG GGCGACCGCC GCGTCCGCAC TCGCTGCTGT GCGCCGGCTC
GGCGCTACCG AACCCGGCGC GGTCACCGTG CTGGCCCGTG ACCTTTCCCG GACCCGGGAC
CTCGCGGCTG CGGCGGAGCG GATGGGCGCC CAGGTGAAGT TCGCGCTGCT CACCGAGATC
GACCAGCACG TGCATGCGGA TCTGGTGGTG TCGACGCTTC CCGCGGGGGC AGCCGACCAG
TGGGCGGAGC CGGTGGCCGC GGCGAAGACC CCGGTGTTCG ACGTCGTCTA CGCCCCGTGG
CCTACCGTGC TGGGGAGCGC AGCCGCCGCA GCGGGAGCGG TGGTGGTTGG GGGGTTCCCC
ATGCTGCTGC ACCAGGCGGT GGCCCAGTTG ACCCTGATGA CGGGGTACGA GGCCCCGGTT
GAAGCGATGC GTGCTGCCGG CGAAGCAGAG TTGGCGCGCC GGGCAGCGCG GAATAATCTG
GACACGTGA
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| Protein sequence | MKRAAVLGSP ISHSLSPVLH TAGYTALGIA DQWHYGRYEC DEHGLAAFLD QCDESWAGLS
LTMPLKKVAL TLADEVEDTA AAVGGANTII FDKGRRHAYN TDVTGITEAL REAGIHRLDT
VTILGAGATA ASALAAVRRL GATEPGAVTV LARDLSRTRD LAAAAERMGA QVKFALLTEI
DQHVHADLVV STLPAGAADQ WAEPVAAAKT PVFDVVYAPW PTVLGSAAAA AGAVVVGGFP
MLLHQAVAQL TLMTGYEAPV EAMRAAGEAE LARRAARNNL DT
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