| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2058 |
|---|
| Symbol | |
|---|
| ID | 3581733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 2409773 |
|---|
| End bp | 2411215 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637685754 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_290114 |
|---|
| Protein GI | 72162457 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00793169 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTGA TCGCCAGCGC AGCCGAGATG CGTGCCATCC CCCGTTCGAA GGAGTTCCGC
AACGGTGCGG TGTCCTTCTG GTACCGCGAA CTGGGGCTTC CGAAACGGCG TGCCGCCCTG
CCCGGTGACG CCGACTACGA CGTCTGCATC GTCGGTGCCG GATACACCGG GCTGTGGACC
GCCTACTACC TCAAGAAAGA GCAGCCCGAC CTGCGCATCG CGATCCTCGA GCGGGAATTC
GCGGGCTTCG GCGCCTCCGG GCGGAACGGC GGCTGGCTGT CCGCGGAGTT CGCTGGCTCC
CGGGAGCGCT ACGCCAAAGA GCACGGCAAA GGGGCGGTGA TCGCCCTGCA GCGCGCCATG
ATGGCTACGG TCGACGAAGT CATCACGGTC GCCAAGGACG AAGGCATCGA CGCCGACATC
GTCAAGGGCG GCATGCGCAT CGTCGCCACC AACCACGCAC AGAAGGCCCG CCTGCTCCAG
GAGATCGCCT ACCTGCAGGA GTGGGGCTAC TGGCCGGAGG ACTACTACCT CTTGGAGCCC
GACTACGAGC CGATGCTGCG GGTCGACGGG GCAGTGGCGG AAGCGTTCAG CCCGCACGCC
GCGCGCATCC ACCCCGCCAA GCTGGTCCGC GGCCTGGCCG CCGTGGTGGA GAACCTCGGC
GTGGACATCT TCGAAGGCAC CGCCGTCACG GAACTGCGGC CGCGCAAGGA CGCGCAGCGG
CCAGCCGCGG TCGCCGAACA GGGCACGGTA CGGGCCGACT ATGTCATCCG CGCCACGGAG
GGGTTCACCG CGGAGATTGC CGGCTACCGG CGCCAGTGGC TGCCCATGAA CTCCTCGATG
ATCGTGACCG AGCCGCTCAG CCCGGAGGTG TGGAAGCGCA TCGGCTGGGA GGGGCACGAA
GTGCTCGGGG ACGCCGCCCA CGCCTACATC TACGCGCAGC GCACCGCGGA CGGCCGTATC
GCGATCGGGG GGCGCGGGGT CCCCTACCGG TTCGGGTCCG GCCACGACAC CAACGGCGCG
ACCCAGCCGC AGGCGATCGC GGAACTGTGG CGGGCGCTGG CTCGGCTGTT CCCGGCGGCG
AGCGAGGCCC CGGTGGTCCA CGCTTGGTCC GGGGTCTTGG GCGTGCCGCG GGACTGGTGC
CCCAGCGTGT ACCTGGACCG CACCAGCGGA CTGGGCTGGG CCGGGGGATA CGTCGGCAGC
GGGGTTGCCA CCTCCAACCT GGCGGGGCGC ACGCTGCGCG ATCTCGTCCT GGAGCGGAAC
ACGGACCTGA CGCGGCTGCC GTGGGTGGGC CACCGGGCAC GCGACTGGGA GCCGGAGCCG
CTGCGCTGGA TCGGCACCCA CCTCGTCTAC GGCCTCTACC GCGGCGCTGA CCGCCGTGAG
GCATCCCGCA CGCTTGAGAC GTCCACGCTG GCCGAGCTGG CCACCAAGCT CGCCGGACGC
TGA
|
|---|
| Protein sequence | MRLIASAAEM RAIPRSKEFR NGAVSFWYRE LGLPKRRAAL PGDADYDVCI VGAGYTGLWT
AYYLKKEQPD LRIAILEREF AGFGASGRNG GWLSAEFAGS RERYAKEHGK GAVIALQRAM
MATVDEVITV AKDEGIDADI VKGGMRIVAT NHAQKARLLQ EIAYLQEWGY WPEDYYLLEP
DYEPMLRVDG AVAEAFSPHA ARIHPAKLVR GLAAVVENLG VDIFEGTAVT ELRPRKDAQR
PAAVAEQGTV RADYVIRATE GFTAEIAGYR RQWLPMNSSM IVTEPLSPEV WKRIGWEGHE
VLGDAAHAYI YAQRTADGRI AIGGRGVPYR FGSGHDTNGA TQPQAIAELW RALARLFPAA
SEAPVVHAWS GVLGVPRDWC PSVYLDRTSG LGWAGGYVGS GVATSNLAGR TLRDLVLERN
TDLTRLPWVG HRARDWEPEP LRWIGTHLVY GLYRGADRRE ASRTLETSTL AELATKLAGR
|
|---|
| |