| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1927 |
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| Symbol | |
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| ID | 3580835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 2255884 |
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| End bp | 2257143 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 637685619 |
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| Product | 23S rRNA methyltransferase/RumA |
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| Protein accession | YP_289983 |
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| Protein GI | 72162326 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.317953 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCGGC TCACTACCCA CGTCGACGTG CGTCTTGACG GGGTAGCCCA CGGAGGATGG
TGCGTCGGAC GCCACGAAGG CCAGGTCGTC TTCGTCCGCC ATGCCTTGCC GGGGGAGCGG
GTCCGTGCCC GGATCACCGA GGAGACCAGG AGGTTCCTCC GTGCCGAGGC GGTAGAAGTA
CTGGAGGCCT CCCCGGACCG GGTGGCCCCG CCGTGCCCCT TCGCGGGCCC TGGCCGGTGC
GGCGGCTGCG ACTGGCAGCA CGCCTCGCTC GACGCCCAGC GGCGGCTCAA AGCACAGGTG
GTCGCCGAGC AGTTGCGTCG CATCGCCGGA ATCGACCGTG AGGTGGCAGT CGAGGAGCTG
CCTGGCACCC CGGACGGGCT GGGCTGGCGG ACGCGGGTCC GGTTCGCCGT GACCCCCGAC
GGGACGGTCG GGCTGCGCCG GCACCGTTCC CACAGCATCG AACCGGTCGA CTACTGCCCT
CTCGCGCACC CCGGGATCGA CCGGCTCAAC GTGCCCCGCA AGACGTGGCG GAACGCAGCC
GAGATCGAAG TGGCCGCCGC GGCGGGAACC GGAGACACCC TCGTGACGGT CACCCCGGCG
CGCACCGGGA CCCCTGAACT GCCGGCGCTG GACAGTCCGG TCACGGTGCT GCGCCGCTCC
CGGAACGGGC GGGTCCAGCC GCCCCGCGGC CGGCACGGGG TGACCGAAAA CGCGGCTGGG
CGCCGCTGGT GGGTGAGCGC GGGAGCGTTC TGGCAGATCC ACCCGGCTGC CGCCGAGACC
CTCACCGGGG CAGTGCTCGA CGCCCTGGAC CCCCAGCCCG GGCAGACCGC GCTGGACCTG
TACTGCGGGG TCGGGCTTTT CGCGGGTGCG CTCGGCGCAG CGGTAGGCCC GCAAGGCCGG
GTGTTCGGGG TGGAAAGCGG CGCCGAAGCG GTCCGCGACG CCCGCCACAA CCTCCGCGAC
CTGCCGCAGG TCCAGATCAC TCGGGCAGAC GTCGCAACCC ACCTGCGCCG GTGGACGCCT
CCCCGCATCG ACCTGGTCGT GGCGGACCCG CCGCGCTCCG GTATGGGCGC CGACGTGGTG
CGCCGCCTGG CGGCGCTGCG TCCGCAGCGG ATCGCCTACG TCTCCTGCGA TCCCGCGACG
TTCGCCCGCG ACCTGGCTGT CTTCGCGGAG CACGGCTACC GGATGGACGG GTTGCGCGCC
TTCGACGCCT TCCCCATGAC GCACCACGTG GAGTGCGTGG GCGTCCTGCT CCCCGCCTAG
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| Protein sequence | MSRLTTHVDV RLDGVAHGGW CVGRHEGQVV FVRHALPGER VRARITEETR RFLRAEAVEV
LEASPDRVAP PCPFAGPGRC GGCDWQHASL DAQRRLKAQV VAEQLRRIAG IDREVAVEEL
PGTPDGLGWR TRVRFAVTPD GTVGLRRHRS HSIEPVDYCP LAHPGIDRLN VPRKTWRNAA
EIEVAAAAGT GDTLVTVTPA RTGTPELPAL DSPVTVLRRS RNGRVQPPRG RHGVTENAAG
RRWWVSAGAF WQIHPAAAET LTGAVLDALD PQPGQTALDL YCGVGLFAGA LGAAVGPQGR
VFGVESGAEA VRDARHNLRD LPQVQITRAD VATHLRRWTP PRIDLVVADP PRSGMGADVV
RRLAALRPQR IAYVSCDPAT FARDLAVFAE HGYRMDGLRA FDAFPMTHHV ECVGVLLPA
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