| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1894 |
|---|
| Symbol | |
|---|
| ID | 3579783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 2219329 |
|---|
| End bp | 2219982 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637685586 |
|---|
| Product | phosphatidylserine decarboxylase |
|---|
| Protein accession | YP_289950 |
|---|
| Protein GI | 72162293 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0688] Phosphatidylserine decarboxylase |
|---|
| TIGRFAM ID | [TIGR00164] phosphatidylserine decarboxylase precursor-related protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.542259 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCCA AGCGTCATCC AGCCGGACCA CGACGGCTGG TTCCGCGGAT GGCTCGCGGC
TCCGCCCCCT GGCTGCTTCC CGCCTTCACT GCCGCGGGTC TGGCCGTACT TACGAGCCGG
GGTTCGCGAA CGCGCAAGGC GCTCGCAGTC CCCGTAGTAG CCCTGGCGGC GGGGATGGCC
TGGTTTTTCC GTGACCCCGA CCGTGGCCCC GCGAGTGGTC GCTTTCTCTC CGCCGCCGAC
GGTGTCGTCC AGAGCGTCGA TCCACTGCCC GATGGCAGGA CCCGGATCGC GGTGTTCATG
AACCCCCTGA ACGTTCACGT GAACCGGGCT CCGATCGCCG GTGTGGTCAC CGGGGTCGAA
CACCGTCCCG GCGGCTTCCT CCCGGCCTTC GACAAGGACA GCGAACGTAA TGAACGCGTC
ATCTGGACCT TCGACACCGA AGTGGGCGAA GTCACGGTCA TCCAGATCGC TGGGGCGATG
GTCCGCCGCA TCGTCCCGTA TCACCCGGTC GGTGCGAAGG TCGAGCAGGG TGAGAGAATC
GGTCTCATCC GCTTCGGTTC TCGAGTCGAC GTCTACCTCC CCCCGGGCAT TGCGCCTGCG
GTGGAGGTCG GACAGAAGGT CCGCGCCGGC GAAACCCGCC TCGACCGCGA CTAA
|
|---|
| Protein sequence | MTPKRHPAGP RRLVPRMARG SAPWLLPAFT AAGLAVLTSR GSRTRKALAV PVVALAAGMA
WFFRDPDRGP ASGRFLSAAD GVVQSVDPLP DGRTRIAVFM NPLNVHVNRA PIAGVVTGVE
HRPGGFLPAF DKDSERNERV IWTFDTEVGE VTVIQIAGAM VRRIVPYHPV GAKVEQGERI
GLIRFGSRVD VYLPPGIAPA VEVGQKVRAG ETRLDRD
|
|---|
| |