| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1815 |
|---|
| Symbol | |
|---|
| ID | 3579106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 2115034 |
|---|
| End bp | 2116185 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637685507 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_289871 |
|---|
| Protein GI | 72162214 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1994] Zn-dependent proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.434017 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACCAAC CAGACTCCGC AGCTTCCCAG CCCCGGGACA GGAAGGGTGG GCTACGCATC
GGACGCCCAT GGGGCATCCC GGTCTACATC ACCCCGTCCT GGGTGGTGAT CGCGGTGCTG
CTCACCTTCC TCTACCAGCC GGTCGTCGAC AGCATCCTGC ACCTCGGCGC CGCCTCCTAC
CTGGTAGCGC TCCTCTTCGC CGTGCTGCTG TACGTGTCCG TGCTCATCCA CGAACTCGCC
CACTGCGTCG CAGCCCGCCA CTACGGACTC CCCGTACGCA GCATCACCCT CTACCTGCTG
GGCGGAGTGT CCGAAATCGA CCGGGAAGCT GAACAGCCCC GCCAGGAGTT CTGGATCGCC
TTCAGCGGCC CCCTGCTCTC CCTCGTCCTC GCCGGTCTCG GCTTCCTCTG CTACCTGCTG
GTCGACCCTG CCACAGTGCT GGGCGTGCTC ATCTGGCAGC TCTGGGTCGC CAACCTGCTG
GTAGGCGTCT TCAACCTGCT GCCTGGACTG CCCCTGGACG GCGGCCGTAT CCTCCGCGCC
GCCGTGTGGG CAGCCAGCGG ACGGCCGCTG ACCGGCACCA CCGCGGCCGC CTGGGGCGGA
CGCATCCTCG CGATCCTGGT GATCGCGCTC CCCTTCGTCT ACTCCTGGCT GCTATGGCGG
GCCGCCCCCA GCATCGTCAC CGTCCTGTGG ACCACCCTGC TCGGCGCCTT CATCTGGCGC
AACGCCTCCG TCGCCCTGCA CACCGCCCGG ATCCGCGCCC GCCTGCCCCA GCTCGTCGCC
CGCGACCTGG CCCGCACCGC CATCACCGTA ACCACCGACA CTCCGCTCGC CGAAGCGTTG
CGCCGCCGTG CCGCAGCCGA CGCGGAAGCG ATCCTCGTCG TCGACTCTGC GGGCACCCCC
ACCTCCATCG TGGACGACGC TGCAGCCAAC GCCGTACCCG TGGAACGGCG GCCCTGGCTC
CCCGTCAGCC ACACCGCCCA GACCCTCACC CCCGGCACTG TGCTGCCCGC CGACCTTGCC
GGGGAAGACC TGATTAAAGC CATGAACGCC CAACCGGCGT CCCAATACCT ACTCGTCGAC
GCGGACGGCA CCGCAGTGGG GGCGCTGCGT ACCGCCGACG TTCGCGGAGC CATGGAAGGC
AACGGCTTCT AA
|
|---|
| Protein sequence | MNQPDSAASQ PRDRKGGLRI GRPWGIPVYI TPSWVVIAVL LTFLYQPVVD SILHLGAASY
LVALLFAVLL YVSVLIHELA HCVAARHYGL PVRSITLYLL GGVSEIDREA EQPRQEFWIA
FSGPLLSLVL AGLGFLCYLL VDPATVLGVL IWQLWVANLL VGVFNLLPGL PLDGGRILRA
AVWAASGRPL TGTTAAAWGG RILAILVIAL PFVYSWLLWR AAPSIVTVLW TTLLGAFIWR
NASVALHTAR IRARLPQLVA RDLARTAITV TTDTPLAEAL RRRAAADAEA ILVVDSAGTP
TSIVDDAAAN AVPVERRPWL PVSHTAQTLT PGTVLPADLA GEDLIKAMNA QPASQYLLVD
ADGTAVGALR TADVRGAMEG NGF
|
|---|
| |