Gene Tfu_1739 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_1739 
Symbol 
ID3580978 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand
Start bp2026911 
End bp2029364 
Gene Length2454 bp 
Protein Length817 aa 
Translation table11 
GC content68% 
IMG OID637685433 
ProductPAS/protein phosphatase 2C-like 
Protein accessionYP_289797 
Protein GI72162140 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACAGCG ACAGCACTTT CCAGGGAACC TCCTACGATC CGGTTCCCGG TGGGAGCATG 
GCCTCTGCCA CGGTTGACGT GCACGGCACT GTGGTGGCGT GGAGCTTGGG GGCCCAGTGG
CTGTTTGGCT ACCTCCCTTC AGAGGCGGTG GGTCGTCCGA TCACCGAAGT GTTCGGGCTC
GGCGGTCCCG CACCGATCGA CTTCGCGTCG TATCCCGCGG CGTGGGTCGG CGAGGTGAAC
GCGCATGCCC GGGACGGTAC TCCGCTGCCG TTGCAGTTGT ATGCGCACCC GCTGCACGGC
CCGCAAGGGA TTGTCCACTG GTATCTGACC ATCTTGGACC GGTCTGCGTC TCAGGAGAAC
CAGCCGCCGG TGGAGGACCC GGATCTGGCA CACCTGCGCG AGTGGACGCT GGCCCAATCG
CCGCTGCCAG TGGCGATCTT CAACCACAAG GGGCAGCTCG CCGAGATGAA CGATTCGATG
GCCCGCCTCT CCGGGATTCC CGTGCAAGAA GCCTTGGGGA AGCGGCTACG GGAGCTCACC
CCGCTGCCGA TCTTCACCGA ATTCGACGAC CTTGTGGCAC GGACCCTGCG GGAAGGGAAG
CTGATCCGCC ACGAGGTGCG CAGCCAGTTG CGCGAGGACT CCCCGGAACG TGCCTGGACG
CTGTTCTTTG CGCCGCTGAA GGACCCTGCC GGGCACAACC GGGGCGCCGC CTGCACGGTG
TTCGACACCT CTGAGCAGTA CTGGGCGCGC CGCCGCTTGG CCGTGCTGAA CGACGCCAGC
ATGCGGATCG GCACCACGTT GGATATGACC CGTACCGCAG AAGAGACCGC GGAGGTGCTG
GTCCCCCAGT TCGCCGACTC GGCTTTCGTG CTGCTGCTGG AGTCGGTCTT CAAGGGCGCG
GAACCGACGT TCGCTCCGCT CCACGACCCG GTTTCCCTGC GGTGCCTGGT CCGCCGCTCC
ACTTTGCGGG AACCCCTCCA TATCGAGGGG ATCCCTGAAC CGGGCAAGGT GGCGCGCTTC
CCGTTGAACT CGCCGCTGGG CCGGTGCCTG TCGGAGCAGC GCTCGGTACG GTTCCGGGTG
GACTCCGCGG AGCTCGAGGA ATGGCTGGAA CGGTACCCCG CCTACCGGGA GATCATCCAG
GCGGCCGGGG TGCGGTCGTT CATGATGCTG CCGCTGCTGG TTGGTGGCCG CCCGTTCGGT
CTCATCCTGC TCACCCGGCG CCACGGCTTG GCGCCGTTCA GCAAGGACGA CCTGCTGTTG
GCGCAGGACA TTGCCACCCG GGCCGCGGCG CGGATCGACA ACGCCCGCCG CTATTCGCGG
GAGCGCAGCG CTGCGCTGAC TCTCCAGCGG AGCCTGCTGC CGAAGCGGCT GCCGCACAAT
TCCGCGGTGG AGGTCGCCAC CCGCTACATG CCTGCCGGTT TCCGGTTCGG GGTGGGCGGC
GACTGGTATG ACGTGATCTC GCTGTCGGGG GCGCGGGTGG CGCTCGTGGT GGGGGACGTC
ACCGGGCACG GGCTGCACGC TTCCGCCACC ATGGGGCAGT TGCGCACGGC GGTGCGCGCC
CTCTCGGATG TGGACTTGGT GCCGGAAGAG CTCCTCACCT ACCTGGACGA TCTGGTGATC
CGACTCAACA CGGAGGAGGC GACCTACTCT TCCGCCGAGG AAAGCCCTCG GCCGGACACC
ATGCCCGAGA TCGGCGCGAC CTGCCTGTAT GCGATCTACG ATCCGGTGTC GCGACGCTGC
TCTATGGCGC GGGCCGGGCA TCCTCCGCCT GCCGTGGTCC ACCCGGACGG GTCGGTCGAG
TTCGTGGCCA TGCCCGCGGG GCCTCCGCTG GGGGTGGGCG GGGTGCCGTT CGAGTCGGTG
GAATTCGAGG TGTCACCCAG CAGTCTGCTG GTGCTCTACA CCGACGGCCT GGTGGAGTCG
CGGACCACGG GCATGGACCA GGGGTTGGAG CAGTTGCGCG CGGTCTTGTC GCAGTCTTCC
TCGTCGCTGG AGGGAGTCTG CGATTCGGTG GTGCGCACCC TGCTGCCGGC TGGTGCGATC
GACGATGCAG CGCTGCTGGT GGCCCGCACC CGCGCCTTGG ATTCCCGCAA GGTGGCCACG
TGGGACCTGC CTGCGGACCC CGCAGTGGTG GGGGAGGTCC GCGCGTGGAC GACACGGCAG
TTGGCCGCGT GGGGGTTGGA GGAGTTGGCG TTCACCACCG AACTGGTGGT CAGCGAACTG
GTGACCAACG CGATCCGCTA TGCCAGCGCC CCCATCCAGT TGCGGCTGAT CCAGGATGGG
ACGCTGATCT GCGAGGTCTC CGATGCCAGC AACACTGCGC CGCATCTGCG GCGGGCGCGG
ACCTTTGACG AGGGGGGACG CGGCCTGTTC CTGGTGGCGC AGCTCAGTCG CCGCTGGGGG
ACGCGACACC GCACCAACGG CAAGACGATC TGGGCGGAGC AGGCCCTGCC GTAA
 
Protein sequence
MDSDSTFQGT SYDPVPGGSM ASATVDVHGT VVAWSLGAQW LFGYLPSEAV GRPITEVFGL 
GGPAPIDFAS YPAAWVGEVN AHARDGTPLP LQLYAHPLHG PQGIVHWYLT ILDRSASQEN
QPPVEDPDLA HLREWTLAQS PLPVAIFNHK GQLAEMNDSM ARLSGIPVQE ALGKRLRELT
PLPIFTEFDD LVARTLREGK LIRHEVRSQL REDSPERAWT LFFAPLKDPA GHNRGAACTV
FDTSEQYWAR RRLAVLNDAS MRIGTTLDMT RTAEETAEVL VPQFADSAFV LLLESVFKGA
EPTFAPLHDP VSLRCLVRRS TLREPLHIEG IPEPGKVARF PLNSPLGRCL SEQRSVRFRV
DSAELEEWLE RYPAYREIIQ AAGVRSFMML PLLVGGRPFG LILLTRRHGL APFSKDDLLL
AQDIATRAAA RIDNARRYSR ERSAALTLQR SLLPKRLPHN SAVEVATRYM PAGFRFGVGG
DWYDVISLSG ARVALVVGDV TGHGLHASAT MGQLRTAVRA LSDVDLVPEE LLTYLDDLVI
RLNTEEATYS SAEESPRPDT MPEIGATCLY AIYDPVSRRC SMARAGHPPP AVVHPDGSVE
FVAMPAGPPL GVGGVPFESV EFEVSPSSLL VLYTDGLVES RTTGMDQGLE QLRAVLSQSS
SSLEGVCDSV VRTLLPAGAI DDAALLVART RALDSRKVAT WDLPADPAVV GEVRAWTTRQ
LAAWGLEELA FTTELVVSEL VTNAIRYASA PIQLRLIQDG TLICEVSDAS NTAPHLRRAR
TFDEGGRGLF LVAQLSRRWG TRHRTNGKTI WAEQALP