Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_1739 |
Symbol | |
ID | 3580978 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | + |
Start bp | 2026911 |
End bp | 2029364 |
Gene Length | 2454 bp |
Protein Length | 817 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637685433 |
Product | PAS/protein phosphatase 2C-like |
Protein accession | YP_289797 |
Protein GI | 72162140 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACAGCG ACAGCACTTT CCAGGGAACC TCCTACGATC CGGTTCCCGG TGGGAGCATG GCCTCTGCCA CGGTTGACGT GCACGGCACT GTGGTGGCGT GGAGCTTGGG GGCCCAGTGG CTGTTTGGCT ACCTCCCTTC AGAGGCGGTG GGTCGTCCGA TCACCGAAGT GTTCGGGCTC GGCGGTCCCG CACCGATCGA CTTCGCGTCG TATCCCGCGG CGTGGGTCGG CGAGGTGAAC GCGCATGCCC GGGACGGTAC TCCGCTGCCG TTGCAGTTGT ATGCGCACCC GCTGCACGGC CCGCAAGGGA TTGTCCACTG GTATCTGACC ATCTTGGACC GGTCTGCGTC TCAGGAGAAC CAGCCGCCGG TGGAGGACCC GGATCTGGCA CACCTGCGCG AGTGGACGCT GGCCCAATCG CCGCTGCCAG TGGCGATCTT CAACCACAAG GGGCAGCTCG CCGAGATGAA CGATTCGATG GCCCGCCTCT CCGGGATTCC CGTGCAAGAA GCCTTGGGGA AGCGGCTACG GGAGCTCACC CCGCTGCCGA TCTTCACCGA ATTCGACGAC CTTGTGGCAC GGACCCTGCG GGAAGGGAAG CTGATCCGCC ACGAGGTGCG CAGCCAGTTG CGCGAGGACT CCCCGGAACG TGCCTGGACG CTGTTCTTTG CGCCGCTGAA GGACCCTGCC GGGCACAACC GGGGCGCCGC CTGCACGGTG TTCGACACCT CTGAGCAGTA CTGGGCGCGC CGCCGCTTGG CCGTGCTGAA CGACGCCAGC ATGCGGATCG GCACCACGTT GGATATGACC CGTACCGCAG AAGAGACCGC GGAGGTGCTG GTCCCCCAGT TCGCCGACTC GGCTTTCGTG CTGCTGCTGG AGTCGGTCTT CAAGGGCGCG GAACCGACGT TCGCTCCGCT CCACGACCCG GTTTCCCTGC GGTGCCTGGT CCGCCGCTCC ACTTTGCGGG AACCCCTCCA TATCGAGGGG ATCCCTGAAC CGGGCAAGGT GGCGCGCTTC CCGTTGAACT CGCCGCTGGG CCGGTGCCTG TCGGAGCAGC GCTCGGTACG GTTCCGGGTG GACTCCGCGG AGCTCGAGGA ATGGCTGGAA CGGTACCCCG CCTACCGGGA GATCATCCAG GCGGCCGGGG TGCGGTCGTT CATGATGCTG CCGCTGCTGG TTGGTGGCCG CCCGTTCGGT CTCATCCTGC TCACCCGGCG CCACGGCTTG GCGCCGTTCA GCAAGGACGA CCTGCTGTTG GCGCAGGACA TTGCCACCCG GGCCGCGGCG CGGATCGACA ACGCCCGCCG CTATTCGCGG GAGCGCAGCG CTGCGCTGAC TCTCCAGCGG AGCCTGCTGC CGAAGCGGCT GCCGCACAAT TCCGCGGTGG AGGTCGCCAC CCGCTACATG CCTGCCGGTT TCCGGTTCGG GGTGGGCGGC GACTGGTATG ACGTGATCTC GCTGTCGGGG GCGCGGGTGG CGCTCGTGGT GGGGGACGTC ACCGGGCACG GGCTGCACGC TTCCGCCACC ATGGGGCAGT TGCGCACGGC GGTGCGCGCC CTCTCGGATG TGGACTTGGT GCCGGAAGAG CTCCTCACCT ACCTGGACGA TCTGGTGATC CGACTCAACA CGGAGGAGGC GACCTACTCT TCCGCCGAGG AAAGCCCTCG GCCGGACACC ATGCCCGAGA TCGGCGCGAC CTGCCTGTAT GCGATCTACG ATCCGGTGTC GCGACGCTGC TCTATGGCGC GGGCCGGGCA TCCTCCGCCT GCCGTGGTCC ACCCGGACGG GTCGGTCGAG TTCGTGGCCA TGCCCGCGGG GCCTCCGCTG GGGGTGGGCG GGGTGCCGTT CGAGTCGGTG GAATTCGAGG TGTCACCCAG CAGTCTGCTG GTGCTCTACA CCGACGGCCT GGTGGAGTCG CGGACCACGG GCATGGACCA GGGGTTGGAG CAGTTGCGCG CGGTCTTGTC GCAGTCTTCC TCGTCGCTGG AGGGAGTCTG CGATTCGGTG GTGCGCACCC TGCTGCCGGC TGGTGCGATC GACGATGCAG CGCTGCTGGT GGCCCGCACC CGCGCCTTGG ATTCCCGCAA GGTGGCCACG TGGGACCTGC CTGCGGACCC CGCAGTGGTG GGGGAGGTCC GCGCGTGGAC GACACGGCAG TTGGCCGCGT GGGGGTTGGA GGAGTTGGCG TTCACCACCG AACTGGTGGT CAGCGAACTG GTGACCAACG CGATCCGCTA TGCCAGCGCC CCCATCCAGT TGCGGCTGAT CCAGGATGGG ACGCTGATCT GCGAGGTCTC CGATGCCAGC AACACTGCGC CGCATCTGCG GCGGGCGCGG ACCTTTGACG AGGGGGGACG CGGCCTGTTC CTGGTGGCGC AGCTCAGTCG CCGCTGGGGG ACGCGACACC GCACCAACGG CAAGACGATC TGGGCGGAGC AGGCCCTGCC GTAA
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Protein sequence | MDSDSTFQGT SYDPVPGGSM ASATVDVHGT VVAWSLGAQW LFGYLPSEAV GRPITEVFGL GGPAPIDFAS YPAAWVGEVN AHARDGTPLP LQLYAHPLHG PQGIVHWYLT ILDRSASQEN QPPVEDPDLA HLREWTLAQS PLPVAIFNHK GQLAEMNDSM ARLSGIPVQE ALGKRLRELT PLPIFTEFDD LVARTLREGK LIRHEVRSQL REDSPERAWT LFFAPLKDPA GHNRGAACTV FDTSEQYWAR RRLAVLNDAS MRIGTTLDMT RTAEETAEVL VPQFADSAFV LLLESVFKGA EPTFAPLHDP VSLRCLVRRS TLREPLHIEG IPEPGKVARF PLNSPLGRCL SEQRSVRFRV DSAELEEWLE RYPAYREIIQ AAGVRSFMML PLLVGGRPFG LILLTRRHGL APFSKDDLLL AQDIATRAAA RIDNARRYSR ERSAALTLQR SLLPKRLPHN SAVEVATRYM PAGFRFGVGG DWYDVISLSG ARVALVVGDV TGHGLHASAT MGQLRTAVRA LSDVDLVPEE LLTYLDDLVI RLNTEEATYS SAEESPRPDT MPEIGATCLY AIYDPVSRRC SMARAGHPPP AVVHPDGSVE FVAMPAGPPL GVGGVPFESV EFEVSPSSLL VLYTDGLVES RTTGMDQGLE QLRAVLSQSS SSLEGVCDSV VRTLLPAGAI DDAALLVART RALDSRKVAT WDLPADPAVV GEVRAWTTRQ LAAWGLEELA FTTELVVSEL VTNAIRYASA PIQLRLIQDG TLICEVSDAS NTAPHLRRAR TFDEGGRGLF LVAQLSRRWG TRHRTNGKTI WAEQALP
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