| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1600 |
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| Symbol | |
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| ID | 3581087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 1843065 |
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| End bp | 1844732 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637685294 |
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| Product | CRISPR-associated Cse1 family protein |
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| Protein accession | YP_289658 |
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| Protein GI | 72162001 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02547] CRISPR system CASCADE complex protein CasA/Cse1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.214237 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACAACTG ACGCACCCTC CTTTAACCTG ATCACGCAGC CGTGGCTGCC CGTGCAATAC
CGGGACGGCA CCGAAAAAGA ACTGTCGCTG CTCGAAGTCT TTAAACAGGC GCCACTTTTG
CGCCGACTCG TCGGCGACGT GCCCACCCAA GAGTTCGCCC TCCTACGGCT CCTACTGGCG
ATCCTGCACG ACGCGATTGG CGGCCCAGAA GACTCCGACG AGTGGGCTGA ACTGTGGACG
CAAGACGAGG CAGAACAACA GCTGCCCTTC GACTGCATTG CCTCATACCT GGAGCAGTAC
TACCACCGCT TTGACCTGCT GCACCCCACC ACTCCGTTCT TCCAGGTCGC TGATTTGCAC
ACCCAGAAGA ACGACGTGTT CTCCCTAGAT CGGATCGTCG CCGATGTCCC CAACGGGGAG
CTGTTCTTCA CCATGCGGGC CCGCGGCGTG GACCGCCTCA GCTTCGCTGA AGCCGCCCGC
TGGCTAGTCC ACGCCCACGC CTACGACACT TCCGGCATCA AATCCGGTGC TGTAGGAGAC
CCTCGGGCCA AAGGCGGCAA AGGCTACCCA CAAGGAGTTA GCTGGGCCGG AAACCTCGGT
GGCATTCTGG TCGAAGGCGC CAACCTGTAC GAGACACTGC TGCTCAACCT GGTGGCGTTC
GACACCGACA ACCTCATAGT TACCCCCGAG GACCGCCCGG CCTGGCGGCA GCCACCCACC
ACCGCCGCCC CCGCAGACGA CGAAGAACTC GCCCAACGCC CGTACGGTCT ATGCGACCTC
TACACCTGGC AAAGCCGCCG TATCCGACTG CACTACGACG CCGACGGTGT TTACGGGGTT
CTGCTCGCCT ACGGCGATCC GCTCGCCCCG CACAACAAGC ACAACCACGA ACCGATGACC
GCCTGGCGGC GCAGCCCAGC CCAAGAGAAG AAACTGAAAA AGCCACAGGT CTACCTGCCG
CGCGAACACG ACCCGACACG CAGCGCCTGG CGGGGCCTCG GCGCCCTCGT GGCCGGGGAG
GCAAGTGGAG CTGAACAGCG TGGCGAAGCC GCAGCGATCG TGCGCCCCCG CATCCTCGAC
TGGGTGGCAC GTCTCGTCAA CGAAGGCTTC CTGCCCGAAG ACTACTTCAT CCGCACCCGG
CTCATCGGCG TCTCCTACGG AACCCAGCAG GCCGTCATCG ACGAAATCGT CGACGACCAC
GTGGCCATGG CCGTGGTCCT GCTCCACGAA CGCGACAGCG GCCTGGGGCG CACCGCGATC
AAAGCAGTGG AAGACGCCGA AAAAGCAGTC ACCGTCCTCG GAGGCCTCGC CGCTGACCTC
GCGAAAGCGG CCGGAGCTGA CCCCGAAACC CCACGTGCTG CAGCACGTGA TCGCGGATTC
GGCATGCTCG ACGGTCCTTT TCGAACCTGG CTGGCCACCC TCGCCCCCGG CACAGACGCC
ACCGAAAGAC GCCGCGCCTG GCAGCAGAAA GCCCACCGCA TCATCAGCGA CCTTGGCAGG
CAACTCGTTG CAGAAGCAGG GGAAGCTGCA TGGAACGGCC GGGTCATCAA GGGCAAAAAC
ACCGATGTCT GGCTCAACGC TTCCCGAGCT GATCTGAAGT TCCGCGCCGA ACTGAAAAAG
GAGCTTCCCA TGGCCACCAG TGAACAGACA GGTGAGGCAG CATCGTGA
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| Protein sequence | MTTDAPSFNL ITQPWLPVQY RDGTEKELSL LEVFKQAPLL RRLVGDVPTQ EFALLRLLLA
ILHDAIGGPE DSDEWAELWT QDEAEQQLPF DCIASYLEQY YHRFDLLHPT TPFFQVADLH
TQKNDVFSLD RIVADVPNGE LFFTMRARGV DRLSFAEAAR WLVHAHAYDT SGIKSGAVGD
PRAKGGKGYP QGVSWAGNLG GILVEGANLY ETLLLNLVAF DTDNLIVTPE DRPAWRQPPT
TAAPADDEEL AQRPYGLCDL YTWQSRRIRL HYDADGVYGV LLAYGDPLAP HNKHNHEPMT
AWRRSPAQEK KLKKPQVYLP REHDPTRSAW RGLGALVAGE ASGAEQRGEA AAIVRPRILD
WVARLVNEGF LPEDYFIRTR LIGVSYGTQQ AVIDEIVDDH VAMAVVLLHE RDSGLGRTAI
KAVEDAEKAV TVLGGLAADL AKAAGADPET PRAAARDRGF GMLDGPFRTW LATLAPGTDA
TERRRAWQQK AHRIISDLGR QLVAEAGEAA WNGRVIKGKN TDVWLNASRA DLKFRAELKK
ELPMATSEQT GEAAS
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