| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1124 |
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| Symbol | |
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| ID | 3579326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 1310860 |
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| End bp | 1315545 |
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| Gene Length | 4686 bp |
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| Protein Length | 1561 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 637684819 |
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| Product | helicase, C-terminal:DEAD/DEAH box helicase, N-terminal |
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| Protein accession | YP_289185 |
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| Protein GI | 72161528 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.416463 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCACCA CCCTGGACCC CATCGGCGTC AGCGCCCTGA TCAGTGACAG CTACCGCCGC
TACCTGCGCT CCCTGCTGCC GCTGCGCGAC CGCGGACTCG CCGACGCCCT GGAGGAGCAG
ATCAGCAGCA GCCCGCTGCT GACCAAGGGG CCGCTGCTGG AGGCCACCCC GCCCTACCGG
ACCGGCGCCA CCCCGCGCCA ACTGGTCGCC GAAGGCGTGC TGTCGCCCTC CTTCGCCGCG
CCCGGCGGCC CCGCGATCCA CCTGGACCGC CCCCTCTACC TGCACCAGGA GCAGGCGATC
CGCAAGGCCC GCGCCGGACG CAACCTGGTG GTGGCCACCG GCACCGGGTC GGGCAAGACC
GAGAGCTTCC TGCTGCCCAT CCTCAACGAG CTGGAGGAGC AGCACCGGCG CGGCGAGCTC
GGGCCGGGCG TGCGCGCGCT GCTGCTGTAC CCGATGAACG CGCTCGCCAA CGACCAGCTC
AAACGGCTGC GGGAACTGCT CTCCGGCAGC CCGCACATCA CCTTCGGCCG CTACACCGGC
GAGACCAAGG ACAGCGACCG GCAGGCCCTC GACTCCTACC ACCGCCTGCA CGGCCAGCGC
GACCCGCTGC CCAACGAGCT CATCAGCCGC GAGCAGATGC GGCGCAGGCC GCCGCACCTG
CTGCTCACCA ACTACGCGAT GCTGGAGTAC CTGCTGCTGC GCCCCGCCGA CCTCGACCTG
TTCGAGGGCG AGCACGCCGG GCACTGGCGG TTCGTCGCCC TGGACGAGGC GCACGTCTAC
GACGGGGCCA AGGCCGCCGA ACTGGCGATG CTGCTGCGCC GCCTGCGCGA CCGGGTCGCC
CCCGGCCGCC GCCTGCAGTG CATCGCCACC AGCGCCACCG TCGGCGACGA CCCGCAGGCG
GTGATGACGT TCGCGTCCCG GCTGTTCTTC GACGCGCCGT TCGAGTGGGA CGCGACCGAC
CCCGACCGGC AGGACCTGGT GACCGCCGCC CGCCGCACCG ACGCCCCGGG CCGGCCGTGG
GGGCCGCTGT CGGCCGCCGA CTACGCGGCG ATCGGCCGCG CCGCCGACCC CGGGGCCGAG
CTCGTCGCCG CCGCCCGGCG GCACGGCGTC CCCGACGGCG ACGCCTACCG GGTGCTCGCC
GCCGAACAGC GCATGCGGAA ACTGCGCGCC CTGCTCGCCG ACGGCGGCCC GCAGCCGCTG
GAGGACCTGG CCGTGCGGGT CTTCGCCGGA GAGCACGACG GCACCGTGCG GCCCGCCGCC
GCGCTGGCCG CCCTGGTCGC CCTGGGCAGC CGGGTGCGCG ACCCCGACGG CAACCCGCTG
CTCTCCGCGC GCTACCACCT GTTCACCCGC GCCACCGAGG GCGCGTTCAC CTGCCTGTCC
GGGAAGGGGC CGCACGTCTG GCTCTCCCGC CACGAGCACT GCCTCGACTG CCACGCGCCC
GCGTTCGAGC TCGCCGCCTG CAAACGCTGC GGCGACGCCT ACCTGGTGGG CACCACGGCG
GCCGAGGACG CGGCGGTCCG CTTCCTGCCC CAGCGCCGCC CCCAGGACCA GGTCCTGTGG
CTGCACCTGG GCGACTCCCC GATCGCCGTC GACGACGATG ACGACACCCT GGAGGAGCCC
GTCGCGCGGA CCACCCCCGA GGACGACCAC CTGTGCGTCG GCTGCGGCGC GCTCGGCACC
GCGGCGCGCG CCTGCGTCTC CGGCTGCCCG GGCCGTGCCG TGCGCGCGGT GCGGAAGCTG
CGCAGCAGGA ACGGCCGCCC CAGCGGCTGC CTGTCCTGCG GGGCGCGCGG CCTCGACACG
GTGCGCCGCC TGGAGAGCGG CAACGAGGCC GCGGCGGCCG TGGTGGCGAC CGCGCTCTAC
CAGGCGCTGC CCGAGGACGC CGACGCCGGG CGCGCCGACC GCCCCGGCGG GGGCCGCAAA
CTGCTCACGT TCAGCGACAG CCGCCAGGCC GCCGCGTTCT TCGCGCCCTA CCTGGAGCAC
AGCTACTCGC TGCTGCAGCA GCGGCGGCTC ATCCTCGAGG GGCTGGAGCA CGGCTTCGAC
GCCGCCGACG ACTTCCGGGT CGACGACCTG ATCGGCCACA CCGCGCGGCG GGCCGCGCGC
GCCGGGAGCT TCGAGCGGCG CGTCTCCCGC CAGCGCCGGG AGCACGCCGC CGGCCTGTGG
GTGATGCGGG AGCTCGTCGC CACCGACGAC CGGCAGTCCC TGGAGGGGCG CGGCCTGCTG
CGCGTCCGCA TGGAACGCCC CGAGGGCGTG CGGCTGCCCC CGGCGCTGAC CCGGATGCTC
GGGCTGGACG AGGACGAGGC GTGGGACCTG CTCGGCGAGC TCGTGCGCAC CCTGCGCCAG
CAGGGCGCGC TGACCATGCC CGAGGGGGTG GCCCCCGACG ACGAGGCGTT CGCGCCCCGG
CGCGGCCCCG TCTACGTGCG GGAGAGCGGC CCCGCCCCCA AGCGGAAGGT GATCTCCTGG
CTGCCCGGCC AGGCCAGCAA CCGCCGCGTC GACTACCTGC GGCGGCTGCT GGACCGGCTC
GGCGTCGCCG ACCCCTCGCT CACCCCCGAG GACCTGCTGC GCGGCGCCTG GAAGCTGCTC
ACCGGGCTGG GCGGCGGGCG CGAGGGCGAG GGGTGGCTGT GCTCGGACAG CGACCGCGTC
CTCGGCACGG TGTGGCGGGT CGACCACACC GCCCTGCTGC TGGCCCCCGT GGGCGCGCAC
GCCCCGCTCC ACCAGTGCGA CAGCTGCCGC CGCCTGCACC CGGTGTCGGT GCGCGGGGTG
TGCCCCACCC TCAACTGCCC CGGCACGCTC CACCCGTTCA CGCCGCCCGC CCCCGAGGCG
GACGACGACC ACTACCGGCG CCTCTACCGC AGCCTCAACC CGGTGGTGCT GCGCGCCCAG
GAGCACACCG CGCAGTGGTC CACCGAGGAG GCCGCCCGCA TCCAGGAGGA CTTCGTCGAG
GGCCGCGTCA ACATGCTGTC CTGCTCCACC ACCTTCGAGC TCGGCGTGGA CGTGGGCGAG
CTCCAGGCGG TGCTGCTGCA CAACATGCCG CCCACCACCG CCAACTACGT GCAGCGCGCC
GGACGCGCCG GGCGGCGCAC CGACTCGGCC GCGCTGGTGG TCACGCACGC CCAGCGCCGC
TCCCACGACC TGTTCCGCTA CCAGGAGCCC GAGCAGATGA TCGCCGGGCA GGTGCGCGCG
CCCTACGTGC CGCTCGCCAA CGAGCGCATC GCCCGCCGCC ACGCCCACTC GGTGGCGCTG
GCCGCGTTCT TCCGGCACTG GCACCGCGCC ACCGGGGAGG CCTGGGCCAC GGTCGGCGCG
TTCTTCCTGC CCGGGGAGAA CGGAGCACCC GCACCGGTGA CCCGCGTGGC TGACTTCCTC
ACCCCGGTCC CTGAGGAGAT CAGGGCCGCA CTGCGGCGCA TTCTGCCGAG CAACGTGGCC
GCCGACATCG GGGTGGACGA CGACCGGTGG GTTGCCGAAC TGTGCGAACA CTTGGAGCAG
TTGCGTCTCG AAGTCGACCA GGACGTCGCC GACTTTGAAC GCCGCCGCGT GGCAGCCTTT
GAGAAACGCA ACGACCTGCT GGCTGGGCGG TTCGGGAAGA CCATCAACAC CATCGTGCGC
CGCTCGCTGC TCAGCTTCCT GGCGACCCGC AACGTGCTGC CCAAGTACGG ATTCCCCGTC
GACACCGTGG AACTGCGCAC CCACCATGCC GAAGAGCCGG TGGGCAGCAA ACTTGAGCTG
GCCCGCGACC TCACCTCAGC GATCTACGAG TACGCGCCAG GCGTGGAGAT CGTGGCGGGC
AGCAGAAAAT GGCAGTCAGG CGGGGTGTAC CGGCTGCCCG GGCGGGAGCT GCGCCGCTTC
TCCTACCGGG TGTGCGACAC CTGCGGCTAC TACGCGGAGA GCACGGAACG GCTCGCTGAA
GTCTGTGCGG CCTGCGGGAC CGCAGCCACC GGCACGCCCA CCGAGTACTG CATTCCCGAG
TTCGGTTTCG TGGCCCTGCC CAAGACGGAA GCCGCGGGCC TAACTCCGCC GCAGCGGTCC
TGGCACGGCT CTACCCACGT GCTCCGGCTC GCGGTCGACC CCGTGGAACG ACGGTGGCCG
CTGCCCAGCG GAGGCGAAGT GGTGTGCCTG GCAGGCAGCC GCGGGGAACT CGTGGCGCTC
TCCGAAGGGC CGTCTGGACG CGGATTCTGG ATCTGTGAAT GGTGCGGCTG GGGCGGCAGA
GCAGCCCAGA AGCGTCCTAA AGAGCACACG CACCCGCTCA AAGGCATCCC GTGCACCGGC
CCGCTCAGCC GCCTGTCCTT GGGGCACAAG TACGAAACCG ACCTCGTGGA CATCACCTTC
CACGGGAAGC TGAACATCAC CACAGCGTCG CCCCAGACCC GGTATTCGCT GCTGTACGCT
CTGCTGGAAG GCGCGTCAGC CGCGTTGGAG ATCAGCCGCG ACGACATCGA CGGCACCCTG
TTCTTCCAGG CCGGGCAGAC CACCAGCCTG GTGCTGTTCG ACACGGTGCC TGGCGGGGCA
GGCGGCGCCG TCCGGATTGC CACGCACTTC CGCGAAGTGC TGCTCGCCGC CCGGAAACGG
GTGGAGAACT GCGAGTGCGG GGAAGAGACG TCCTGCTACG GGTGTCTGCG CACCTATCGC
AACCAGACCC GCCACGACCT GCTGGTGCGC AGGGACGCGC TCGCCGCGCT GCACTCGCTG
ACCTGA
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| Protein sequence | MTTTLDPIGV SALISDSYRR YLRSLLPLRD RGLADALEEQ ISSSPLLTKG PLLEATPPYR
TGATPRQLVA EGVLSPSFAA PGGPAIHLDR PLYLHQEQAI RKARAGRNLV VATGTGSGKT
ESFLLPILNE LEEQHRRGEL GPGVRALLLY PMNALANDQL KRLRELLSGS PHITFGRYTG
ETKDSDRQAL DSYHRLHGQR DPLPNELISR EQMRRRPPHL LLTNYAMLEY LLLRPADLDL
FEGEHAGHWR FVALDEAHVY DGAKAAELAM LLRRLRDRVA PGRRLQCIAT SATVGDDPQA
VMTFASRLFF DAPFEWDATD PDRQDLVTAA RRTDAPGRPW GPLSAADYAA IGRAADPGAE
LVAAARRHGV PDGDAYRVLA AEQRMRKLRA LLADGGPQPL EDLAVRVFAG EHDGTVRPAA
ALAALVALGS RVRDPDGNPL LSARYHLFTR ATEGAFTCLS GKGPHVWLSR HEHCLDCHAP
AFELAACKRC GDAYLVGTTA AEDAAVRFLP QRRPQDQVLW LHLGDSPIAV DDDDDTLEEP
VARTTPEDDH LCVGCGALGT AARACVSGCP GRAVRAVRKL RSRNGRPSGC LSCGARGLDT
VRRLESGNEA AAAVVATALY QALPEDADAG RADRPGGGRK LLTFSDSRQA AAFFAPYLEH
SYSLLQQRRL ILEGLEHGFD AADDFRVDDL IGHTARRAAR AGSFERRVSR QRREHAAGLW
VMRELVATDD RQSLEGRGLL RVRMERPEGV RLPPALTRML GLDEDEAWDL LGELVRTLRQ
QGALTMPEGV APDDEAFAPR RGPVYVRESG PAPKRKVISW LPGQASNRRV DYLRRLLDRL
GVADPSLTPE DLLRGAWKLL TGLGGGREGE GWLCSDSDRV LGTVWRVDHT ALLLAPVGAH
APLHQCDSCR RLHPVSVRGV CPTLNCPGTL HPFTPPAPEA DDDHYRRLYR SLNPVVLRAQ
EHTAQWSTEE AARIQEDFVE GRVNMLSCST TFELGVDVGE LQAVLLHNMP PTTANYVQRA
GRAGRRTDSA ALVVTHAQRR SHDLFRYQEP EQMIAGQVRA PYVPLANERI ARRHAHSVAL
AAFFRHWHRA TGEAWATVGA FFLPGENGAP APVTRVADFL TPVPEEIRAA LRRILPSNVA
ADIGVDDDRW VAELCEHLEQ LRLEVDQDVA DFERRRVAAF EKRNDLLAGR FGKTINTIVR
RSLLSFLATR NVLPKYGFPV DTVELRTHHA EEPVGSKLEL ARDLTSAIYE YAPGVEIVAG
SRKWQSGGVY RLPGRELRRF SYRVCDTCGY YAESTERLAE VCAACGTAAT GTPTEYCIPE
FGFVALPKTE AAGLTPPQRS WHGSTHVLRL AVDPVERRWP LPSGGEVVCL AGSRGELVAL
SEGPSGRGFW ICEWCGWGGR AAQKRPKEHT HPLKGIPCTG PLSRLSLGHK YETDLVDITF
HGKLNITTAS PQTRYSLLYA LLEGASAALE ISRDDIDGTL FFQAGQTTSL VLFDTVPGGA
GGAVRIATHF REVLLAARKR VENCECGEET SCYGCLRTYR NQTRHDLLVR RDALAALHSL
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