Gene Tfu_1013 details

Gene Information

• Locus tag: Tfu_1013
• Symbol: rpsD
• ID: 3579273
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermobifida fusca YX
• Kingdom: Bacteria
• Replicon accession: NC_007333
• Strand: +
• Start bp: 1187971
• End bp: 1188582
• Gene Length: 612 bp
• Protein Length: 203 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637684708
• Product: 30S ribosomal protein S4
• Protein accession: YP_289074
• Protein GI: 72161417
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.0175272
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCTACA CCGGACCGAA GGTACGGTTG TCCCGGCGCG CTGGCGTTCC CTTGACCCGT 
AAGGCGGTCA AGTACTTCGA GAAGCGTCCT TACCCGCCCG GTGAGCACGG CCGTCGGGTG 
CGCCGCTCTA CCAGCGACTA CGCCGTCCGT CAGGCGGAGA AGCAGAAGCT GCGCTGGTAC 
TACGACCTTT CCGAGAAGCA GCTGGCCCGC GTCTACGAGA ACGCGAAGAA GCGTCCGGGC 
CGTACCGGCG AGGAGATGAT CGCCGAGCTC GAGCTGCGGC TGGCCACCGT GCTGCTGCGG 
GCGGGCTTCG CCGCCTCCAT CTACGCGGCC CGCCAGTTCA TCAACCACGG CCACATCACC 
GTGGACGGCA AGAAGGTGGA CATCCCCTCC TACCAGGTCA AGCCTGGCCA GATCGTCAGC 
GTGCGGGAGA AGTCGCGCAA GCTGGTCCCG TTCATCGAGG CCGCCGAGGG CGTGCACGCC 
GACGAGAAGA TCGCCAGCTA CCTGGCGGTC AGCCACAAGG ACCTGACCAT CGCCGTGGTG 
GACCGGCCCA AGCGCGAGCA GGTGCCGGTT CCCTTCGACG AGCAGCTCGT CGTCGAGTAC 
TACGCCCGCT GA 

 

Protein sequence

MRYTGPKVRL SRRAGVPLTR KAVKYFEKRP YPPGEHGRRV RRSTSDYAVR QAEKQKLRWY 
YDLSEKQLAR VYENAKKRPG RTGEEMIAEL ELRLATVLLR AGFAASIYAA RQFINHGHIT 
VDGKKVDIPS YQVKPGQIVS VREKSRKLVP FIEAAEGVHA DEKIASYLAV SHKDLTIAVV 
DRPKREQVPV PFDEQLVVEY YAR