| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1002 |
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| Symbol | |
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| ID | 3579262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | + |
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| Start bp | 1177487 |
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| End bp | 1179331 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637684697 |
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| Product | hedgehog/intein hint, N-terminal |
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| Protein accession | YP_289063 |
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| Protein GI | 72161406 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01445] intein N-terminal splicing region |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00822748 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTCAGAC GGATTCACGA CCCGGAACGG GGAGCATCGT TCACGGAATA TGCCGGGGTC
CTCGTGCTGG CCGCGGCAAT CGTGGCCGTC CTGGCATTCT CCGGTATCGC GGCACGCGTC
GCTGAAACAG TCGACTCCGC GGTAGCGGCC ATCCTCGGCG GCGACCCCAT GGACGCCCCT
GAGGGAGACG GCACCACCCC GAGCGGGGGA GGGGGCGTTA CGCCGGACGG GTCCGGGGAA
GGGGCTGGCC AGCCCGGCAC ACCGGACTCC CCGCCGGAGA ACGCGCCTGC GGACGGCACC
GGCTCTGACG AGGGCACCAT CGTGCCCACG GGGGGTGGAG GCAGCGGGCC GACCGCGGCC
GACCAGAACA CCGGTGGCGG ACTCTTGGAC ACGATCAGCC AAGGGCTGAA AGACGTCGGC
ACCGGCATCT GGGACGCGGG CGCCGACTTC GTCACCGGGA TCAAAGACGA CGCCGTCGGC
CTGTGGGAAG GCGCCAAAAA ACTGTGGAAC GACCCGGGGC AGTGGTTCTC GGACGCCAAA
GACAGCATCG TCGAAGGCGC CAAGAACACC TGGAACCAGG TGACCACCGA CCCCGGCGGG
TTCTTCCTCG ACCTGCTCGT CAGCGATGAG GTCCAAGAAG ACTGGAAGAA CGGCGACAAG
ACGCATGCCG TCGCCCAAGG CATCGCGGAA AACCTCATCG GCCTGATCCC CGGCGTCGGC
TGGTACAAGA AAGGCAACCG GGCCCTCAAC GTCATGGGCG GCAAGGACCG CGGCTCCGAG
ACCACCCCCG GACCGGTCCG CGCCGACGGG GACCAGCCCG GCGACAACCG CCGCAGTGAC
GACGAAACCA CCCGGCCCCC GGCGCGGCCG TGCCGGGGCA ACAGCTTCGT GCCGGGCACG
CTCGTGCTGC TGGCCGACGG CACGTACGCC CCCATCGAAA CCATCACCGT GGGGGACGAC
GTGTGGGCGT TCGACCCGCG CACCGGCACC GAAGGCCCCC GCACCGTCAC CGACCTGCAC
ACCAGCCACA GCACCACCAC CCTGGTGGAG CTCACCGTGG ACGACGGCAC CGAGCACGGC
GGTGTCGTGG TCGCCACCGA CGCGCACCCG TTCTGGGTTC CCAGCCTCGC CACGTGGGTG
GCCGCCATCG ACCTGGAACC GGGCACGTGG CTGCGGACCA GTGCCGGAAC CTGGGTCCAG
GTCCGTGCGG TAGCGGTCCG CACAGCCGAA GCCCAGCGAG TCCACAACCT CACCGTTGCC
GACCTGCACA CCTACTACGT TGCGGCCGGA GCAGCCGACG CACTCGTCCA CAACGAAGCA
GGGTGCATCG ACAAGTCCCA CCCCATCGAG GTCGAAGCCG GCCCTGAAGC GGCCCAGGAG
TGGCGGAAAC GCTGGGAAGA ACAAGGACAG GCCCTCAGCC ACCGGCGGAA CGTCGCGGTC
GCCGACATCC GCATCGACGG TTTCAACGCA GGGCAACTGG TGAGCGTCAG CGGGCAGAAC
GGACGTCCCG GCACGGTAGA GCTGCCCGCA AACCCCCGCT ACACGCCGAA ACCCGACATC
AACCGCGACG GCTCGGTGGG AAACACCCGG GAATACGAGA CGGAACGCAA AATCCTGGAG
CACGTGGCAC AGCAGTTGAA CCCGCGCAAC CCGGACGGGA GCATCACCGC GCCGCGCACC
GACATCACCG GGGAAATCCA CCTCTACACG GAGCTTCCCC CATGCCATTC CTGCGGTCGC
GCCCCCTCCG GTGACGATCC GGGAGGGATC ATCGAACAGT TCAAGAGAGA ATTCCCGAAC
ATCGACGTGA AAGTCACCTA CGGCGACGGG CAGACCTACC CCTGA
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| Protein sequence | MLRRIHDPER GASFTEYAGV LVLAAAIVAV LAFSGIAARV AETVDSAVAA ILGGDPMDAP
EGDGTTPSGG GGVTPDGSGE GAGQPGTPDS PPENAPADGT GSDEGTIVPT GGGGSGPTAA
DQNTGGGLLD TISQGLKDVG TGIWDAGADF VTGIKDDAVG LWEGAKKLWN DPGQWFSDAK
DSIVEGAKNT WNQVTTDPGG FFLDLLVSDE VQEDWKNGDK THAVAQGIAE NLIGLIPGVG
WYKKGNRALN VMGGKDRGSE TTPGPVRADG DQPGDNRRSD DETTRPPARP CRGNSFVPGT
LVLLADGTYA PIETITVGDD VWAFDPRTGT EGPRTVTDLH TSHSTTTLVE LTVDDGTEHG
GVVVATDAHP FWVPSLATWV AAIDLEPGTW LRTSAGTWVQ VRAVAVRTAE AQRVHNLTVA
DLHTYYVAAG AADALVHNEA GCIDKSHPIE VEAGPEAAQE WRKRWEEQGQ ALSHRRNVAV
ADIRIDGFNA GQLVSVSGQN GRPGTVELPA NPRYTPKPDI NRDGSVGNTR EYETERKILE
HVAQQLNPRN PDGSITAPRT DITGEIHLYT ELPPCHSCGR APSGDDPGGI IEQFKREFPN
IDVKVTYGDG QTYP
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