| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0816 |
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| Symbol | dapF |
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| ID | 3579695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | + |
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| Start bp | 964712 |
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| End bp | 965536 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637684509 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_288877 |
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| Protein GI | 72161220 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTTTCG CCAAGGGCCA CGGCACAGAG AACGATTTCG TCATTCTTCC CGACCCGGAC
GGGGAGCTCG ACCTCGATGC AGCGACGGTT GCCGCACTGT GCGACCGGCG CGCCGGTCTG
GGAGCGGACG GGGTGCTGCG AGTGGTCCGG ACCAAAGCAT TGGACGAGCC GTTGACGGGG
GAGGCGGCGA CCGCGCAGCG CTGCGAGTGG TTCATGGACT ACCGCAACGC TGACGGCAGT
GTGGCGGAGA TGTGCGGCAA CGGGGTGCGG GTGTTCGCCC GCTATCTTCA GGAGGCCGGC
CTGGTCGGCG CCGCAGCCTT CGAAGTGGGC ACGCGGGCCG GGGCACGCCA CGTGGTGCTG
GAGCCCGACG GGAACATCAC CGTCGACATG GGGCCGGTGC GGATCCTGGG GCCGGGGAGT
GCCCGGTTGG CCGACGGCCC GGTGCACGGG ACGCGGATCT CGGTGGGGAA CCCGCATTTG
GCGTGCCGGG TGGCGCGGCC TGTCGCCGAA GTCGACTTGA GCGCTCCTCC GCTGCTGCGG
GCTGAGGAGT TCCCGCAGGG CGCCAACGTG GAAGTGTTCC GCGAAGTCGC CTCGGGCGTA
TTGGAGATGC GCGTCTACGA GCGCGGGGCC GCTGAGACCC GGTCCTGCGG TACGGGGATT
GTGGCTGCCG CGGCCGCCGC GACTCCCCCG GGCGAGGATG CCCGGTGGAC GGTGCGGGTG
CCGGGCGGGG AGTGCACGGT GGTGCTCGAG TCTGGAGCAG CTCGGCTGAG CGGCCCCGCG
GTGATCGTCG CCGAGGGGGA CGTCCGGCTG TCTGCGCTCC GGTGA
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| Protein sequence | MRFAKGHGTE NDFVILPDPD GELDLDAATV AALCDRRAGL GADGVLRVVR TKALDEPLTG
EAATAQRCEW FMDYRNADGS VAEMCGNGVR VFARYLQEAG LVGAAAFEVG TRAGARHVVL
EPDGNITVDM GPVRILGPGS ARLADGPVHG TRISVGNPHL ACRVARPVAE VDLSAPPLLR
AEEFPQGANV EVFREVASGV LEMRVYERGA AETRSCGTGI VAAAAAATPP GEDARWTVRV
PGGECTVVLE SGAARLSGPA VIVAEGDVRL SALR
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