| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0748 |
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| Symbol | |
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| ID | 3578953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | + |
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| Start bp | 881484 |
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| End bp | 882836 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637684441 |
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| Product | PDZ/DHR/GLGF |
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| Protein accession | YP_288809 |
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| Protein GI | 72161152 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
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| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0422826 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGGCGT TGCTGACCGT GCTGGGGATC GTCCTCATGA TCCTCGGCCT GCTGTTCTCA
ATCGCCTGGC ATGAGCTGGG ACACCTGGTA CCGGCCAAGC TGTTCGGTAT CCGCTGCACC
CAGTACATGG TCGGCTTCGG AAAAACGCTG TGGTCGGTCA AACGCGGCGA CACCGAGTAC
GGCCTCAAAG CGATCCCGCT CGGCGGATAC GTGCGCATGG TCGGGATGAT CCCGCCCGCC
GCGCCCGCCG ACCCCGACAA GCCCATGTCG CGGTGGCGCG CCATGATCGA GGACGCGCGT
GAAGCGTCCT ACGTGGAAGT CGAACCCGGC GACGAAGACC GGCAGTTCTA CCAGCGGCCG
CCGTGGAAAC GGCTCATCGT CATGTTCGGC GGGCCGTTCA TGAACCTCGT CCTGGCCGTG
GTCCTGTTCG CGGTCCTGCT CATGGGGATC GGCGTCTACC AGCCCACCAC CGTGGTCGGC
GCCGTCCACG AATGCGTGGT GCCCGCCACC GCGGCGACCA GCGAATGCCC GGAGGACGCC
GACCCGTCCC CCGCTGCCGC GGCCGGGCTG CAAGTCGGCG ACCGGATCGT CGCGGTCAAC
GGCCAGCCCA CCCCCGACTG GGAGGCCGTG CAGTCCGCGA TCCGCGCGCA CATCGGTCCC
GGCACGGTCG ACGTGATCCG GGACGGCGAG AAGATCACCC TGCACGCCGA CTTCATCGAA
AACCAGGTGG TGAAACGGGA CGAGGACGGC AACACGGTCG TCCGCCGGGA CGCCGACGGC
GATCCGATCC TCGACGAGGA AGGACGGCAG ATCCCGGAGA CGGTCACCGC CGGCTTCCTC
GGTTTCGCGC CGCAAGAGCA GCGGCAGACG CTCAGCGCCG CAGAGACCGC TGCGTTCTTC
GGTGACACCG TGGTCTCCGT CGGCAAGGCG ATCATCACGC TGCCGTCGAA GATCCCCGAC
GTGTTCGCGG CGGCGTTCCT CGGCGCGGAA CGCACCCCCG ACTCCCCCGT CGGCGTGGTC
GGCGCCTCCC GCATCAGCGG CGAGATCCTC GCGATGCCCG CCCCCGTCCT GGACCGGGTC
GCGATGCTGA TCAACCTGCT GGCCGGGATC AACCTGTTCC TCTTCGCCTT CAACATGCTG
CCGATCCTGC CGCTGGACGG CGGGCATATC GTCGGCGCGC TGTGGGAGTC GGTCCGCCGC
TGGACCGCCC GGATCTTCAA ACGCCCCGAC CCCGGACCTT TCGATGTGGC CCAGCTCATG
CCCGTGGCCT ACATCATGGT CGCCTGCTTC GTGGGCTTCA GTCTGATGCT GCTGGTCGCC
GACATCGTCA ACCCGGTCCG CCTGATCTAC TAG
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| Protein sequence | MVALLTVLGI VLMILGLLFS IAWHELGHLV PAKLFGIRCT QYMVGFGKTL WSVKRGDTEY
GLKAIPLGGY VRMVGMIPPA APADPDKPMS RWRAMIEDAR EASYVEVEPG DEDRQFYQRP
PWKRLIVMFG GPFMNLVLAV VLFAVLLMGI GVYQPTTVVG AVHECVVPAT AATSECPEDA
DPSPAAAAGL QVGDRIVAVN GQPTPDWEAV QSAIRAHIGP GTVDVIRDGE KITLHADFIE
NQVVKRDEDG NTVVRRDADG DPILDEEGRQ IPETVTAGFL GFAPQEQRQT LSAAETAAFF
GDTVVSVGKA IITLPSKIPD VFAAAFLGAE RTPDSPVGVV GASRISGEIL AMPAPVLDRV
AMLINLLAGI NLFLFAFNML PILPLDGGHI VGALWESVRR WTARIFKRPD PGPFDVAQLM
PVAYIMVACF VGFSLMLLVA DIVNPVRLIY
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