| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0539 |
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| Symbol | |
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| ID | 3580337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | + |
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| Start bp | 611119 |
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| End bp | 612162 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637684227 |
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| Product | PDZ domain-containing protein |
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| Protein accession | YP_288600 |
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| Protein GI | 72160943 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3480] Predicted secreted protein containing a PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.08903 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCCGTC GTGCGATGAC TCTGCTCACG TCCGCCGTCC TGCTCGTCGG ATTGACGGTG
GCGGCGCTCG CGATCCCCGT CCCCTACGTG GTGGCCTCTC CCGGCCTGGC ATTGAACACG
CTCGGGGAAA TCGACGGGGA ACAAGTCATC CGGATCGAAG GGCAGCCGGT CTACGAGCAC
GACGGGGCGC TGTCCATGGT CACCGTCCAG TACTCGGGCG GACCGGACTC GCGGATGAAC
CTGTTCACCA CCTTGAGCGC CTGGCTCTCC CCGACCCAGG CGGTGCTGCC GGAAGAGGCG
ATCTTCCCGC CCAACACCAG TGCCGAAGAG GTCAGCCAGA CCCAGGCGGC CCAGATGGAC
AACTCCCAGG ACGCGGCTGT TGCCGCGGCC CTCAACGAGC TGGGGATCGA CTACGAGACC
ACCGCGACCG TGCACGCGGT CAACGAAGGC TACCCGGCCG AAGGCGTCCT GCAGTCAGGC
GACGTCATCG TGGAGGTCGA CGGCAAGCCC GTCGCCGACA AGAACGAGGT GGTGGCAGCG
GTCAAAGACC GCTCGCCCGG GGATACGGTC CGCTTCCTCA TCGAACGCGA CGGCCAGCGG
GAAGAAGTCG AAGTCGGCAC GGTCGCTTCC GACAGCGGAG ACCCCATCGT CGGCATCACC
GTCGAAGACA CGATGGTCTT CCCGTTCGAA GTGCAGATCA GTGTCGGCCG GGTGGGCGGC
CCCAGCGCGG GAATGATGTT CGCGCTGGGA GTGATGGACC GCCTCGACCC GGAAGGGCTC
ACCGGCGGGC ACCGGATCGC CGGGACCGGC ACCATCGACC CGGAAGGCAA CGTGGGCGGG
GTCAGCGGAG TCCAGCAGAA GATGATCAGC GCCAAGCGGG AAGGCGCCGA ATACTTCCTC
GTCGCCGCGG AAAGCTGCGA CCAGACTTTC GACTCGCCGG TCACCGGCCA GATCGAAGTG
GTCAAAGTGG AGACACTCAA AGACGCAGTG GCAGCGCTGG AAAACATCCG CGAAGGCAAC
CTCGACGACC TGCCCCGTTG CTGA
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| Protein sequence | MVRRAMTLLT SAVLLVGLTV AALAIPVPYV VASPGLALNT LGEIDGEQVI RIEGQPVYEH
DGALSMVTVQ YSGGPDSRMN LFTTLSAWLS PTQAVLPEEA IFPPNTSAEE VSQTQAAQMD
NSQDAAVAAA LNELGIDYET TATVHAVNEG YPAEGVLQSG DVIVEVDGKP VADKNEVVAA
VKDRSPGDTV RFLIERDGQR EEVEVGTVAS DSGDPIVGIT VEDTMVFPFE VQISVGRVGG
PSAGMMFALG VMDRLDPEGL TGGHRIAGTG TIDPEGNVGG VSGVQQKMIS AKREGAEYFL
VAAESCDQTF DSPVTGQIEV VKVETLKDAV AALENIREGN LDDLPRC
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