| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0403 |
|---|
| Symbol | |
|---|
| ID | 3580002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 449924 |
|---|
| End bp | 454495 |
|---|
| Gene Length | 4572 bp |
|---|
| Protein Length | 1523 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637684089 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_288464 |
|---|
| Protein GI | 72160807 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCAC GCCGCAGCCA CGAAACGCCC CAGGGCCCCG ACCCCCGCAG CCCCGGGGCG
GCTCCGGCAT ACCGTGAAGC GCCCCCGGCA CTCACCGGGC GGGAACTCGC CGACGCGGTC
TACCTCGCAG CGTGGCAGCA GCACACCGCA CAGCACCCCC CGGCCCGTCC CAGCGGTGGC
AAGGACACGG CGCTGTATGC GCCCAGCCGG GTGCGGGGCG CCCTGTTGGC CCGTCCCAGC
CAGCAGCGTC ATGACCCAAA GCGGCGCCGT CATCGGGTGC GGGGCGCCCT GTTGGCCCGT
CCTAGCGGTG GCAAGGACAC GGCCCCCGCA GCAGGGCCGC AGCGCCCCGG CACGGACCCG
TCCGCAGCCG TCCTCGGCGC AGCAGAAAAA ACTGCGGGCA CCGAACCGCC CCGCCTTCCC
CCGGCACCCG CGCCCCCCTC CGGCGCGCTG CGCCCCCACC CTTCCCCGCT GCTGCACCGC
TCCGCGCTCT ACCAGGCGCT GCGCCCGTTC CGGTTGGCCG CCACCGACCC GTGGCAGCAC
TCCTACGACG CGGAAGAGAC CGCGCGCGGC TATGCGCGTC GCCTGCTGGC CTCCCCGCAC
CCAGGAGGCG GGCACCGGCC AGTTGCCGTA ACCCCGCAGT GGGCCCCTTT CGTCCGGCCC
GGAGTGCAGT TGACCGTCCT CGTCGACGAG AGCGTCTCCA TGCTCTTCCA CCAGGACCAG
GTCAACGACT TCATCGGCCT GGTGCGCTCC TCCGGGGTGT TCCGGGGCGT GCGGGTGGAG
CGCTTCACCT CCGACTCCGC CGACCCCGCA CCCGTCCCAG CCGCCGGCTG GGGCGCGAGC
AGCGGGAAAG ACCCCGGCGG AATCCACATC GCCGTGGTAC TCAGTGACGG AATCGGTGAA
GGATGGGCCC GCGGCAGCGT GCAAAGCTGG CTCGGCTGTC TCGCTCAACG CCTGCCCGTG
GCGATCATCC ACCTCCTCGA CCCGCGGCAG TGGAGCAGGA CCGGGATCCG GCCCGCCGCG
ATGGAGCTGA CCGTTGCCGC GCACCTCGGC CGCGCCCCCG CCAACCGCCA CTACACTGCC
CGCCCTTTCC AATGGCCGGA CGGGCTCCCC CTGCCCGAAC CGGAGTTTCC GCACTCCGCG
CTCTCCGTGG TGCTGCCCGT GCTGGCGTCG CGGCCCGAAA TGATCCACGC CTGGGCCCGG
TTCGTGATGG GCACCCGGCA GCGCACCCTC AACGCGGGAG CGCTGCGGGT CGTGCCGGGA
GACACCGCAG CGAACGCCGC CGGGGAGCGG CCCACCGCCG CCCCCACCCC GGAAGCCAGA
GTGCGGCGCT TCCGCCGCGA CTCCTCCGAA ACCGCGTTCC AGATCGCGGT GGACCTCGCC
GCGGTGCCGC TCACCGAGCC CGTCATCGCC GCGGTATGCC AGCGGTTCGC CGGGCACCCG
CAGCCCTCCG AACTCATCGA AGTGCTCTTC AGCGGGCTGG TGACCGAAGT CGACTCCCCG
GTGGTCACCC CGGAGCGGCG GATCCGGTGG GAGTACCGGA GAGGAGTCCG GGAAGCGCTG
CTGTCCCTTG GCGGGCGGCG CTCCCGGATC CGGCGCACTC TCGCCGACAT TGCCGCCGAG
TTCGCCGGCT ACGACCCCTG GTTCGCGCTG CTGCGCCGCA TCCTCGACGA CTCCCCGGTA
GGGGAGCTGC CGGAGCTCGA CGAAACCTCA CTCCGCCTCG CCGCGGACAC CCTGCCCGCG
TTGGAGAGCA TCGGCCTCGC CGACCTCCAC CACGGCCTCG TGTACCGCAT CAAAGAGCAG
ATGCTGGCCC ACCAGGGGGC TGGGCACCCC GACGACTGGT CCGACACTCT CCTGGAGATC
GCCCCTACCG GGCCTCTCGT CCCCGGATCG TCCGGCCAGC ACGGCACAAC GGCCTCTGAA
CGTGTCCCCC ACGCGCCGCA TCCGACTGAG ACACCTTCGA ATTCCGCGAG TGATGAGAGC
AGCATGATGT CCCAGAGGTC TGTTTCGATA TCTGACAACT TCCCGGGTGG TAGTGGATCG
ACGGGGATTG GTGCGGGGAG AAACACCTCG CTTTCCGCGA TCTGGGGCGG GGACATCCCC
CCGCGCAACG CGCTGTTCAC CGGCCGCGAC GACCTGATCC TCCGCCTGCG GGAGCAACTG
CGGTCCTCCA GCGAGGAAGG GCGGATGACG CCCAGCGTGC TCAAAGGCAT GCCCGGGATC
GGGAAGACGC AGTTGGCGAC GGAGTACCTG TACCGCTTCC GGGACGAATA CGACCTCGTC
TGGTGGGTGC GTGGCGGGCA GACCCACCAG ATCCACGAGG CGTACACCCT GCTCGCCCAG
GAGCTCGACG TGTTCCGCGA CAACACGTCG ATCAACAGCA CGATCCACTC GGTGCGCGAG
GCGCTGCGCA GAGGAAAGCC CCGGTCCCGG TGGCTGCTCA TCTTCGACGA CGTCCGGCAG
CCCGACGACA TCATGCGCTA CCTGCCGATC GCCGGCCCGG GGCACGTCAT CATCACGACA
CGCAACCTCA CCTGGCCGGA GGGAGGCTAC TTCAAGACGC TTCCCGTGGA AGTCTTCAGC
CTGCAGGAGA GTGTTGCGCT CCTCAGTAAG TGCGGGCTCG TGGGCTTCAG CAAACACGAA
GCAGCGGAAC TCGCCGAAGA ACTCGGCCAC ATGCCGATCG CCCTGCGTCA GGCAGCGGCG
TGGATGAACG ACAGCGCCAC CACCATCGCC GAATACCTGG AGTTCTACCG GGACAAGCAA
GCCCAGTTGG CGCCGATGTT TGCGCCCGCC GACCCCGACT ACCCGGAGAC GGTGATCACC
GCGCTGAACG TCTCCCTGGA CCGGCTCGCC GTCACCAATC CGGCGGCGCT GCAACTGCTT
CAGGTCTGCT CGTTCTTCTC TACCGCGCCG ATTCCCCGGT CCCTCTTCCG CCACGCGCAG
GACGTGGCGG CACCTCCTGA GCTGGAGGCC GCGCTACAGG AACCCAACAA GCTCCACCGC
GCCTTCAGTG ACATCGGCCG CTATGGACTG GCGGTGCTCA ACCACCGGAC CCGTACCGTC
CAAGTGCACC GGTTGGTCCA GCAAGCGTTG CGTGTTCCGC TGACCGCGGA CGATCAAGAA
CAGCGGCGAC ACTGCGCCCA CCTGCTGCTC GCCAAGAACG ACCCGCAGGA CACCTCATCT
CCTGGGGCCC GAATCCGTTA CGCCCAGCTA CTTCCCCACG TGTGGGCGAC CGAGGCGTGG
GACTGCACTG ATTCGTGGGT GCGTCGACTT GTCCTCCAAG AGATCTACGT CACTGACCTG
CGGGGAGAGC ACAGTGACAG CAAACAGCTG GCGGAGGCCA CGCTGTCGGT CTGGCGAGAA
AAGCTGGGGA AGACCGCCCC GGAGACGTTG CGGGCAGAGC TTTACCTGGT GCGGGCCCTG
CGCAACCTAG GGGAGCGGAA ACGCGCTTAC GAACTGTGCG AACGGGTGCT GCGTATCCTC
ACCGAGCAGC ACGGGCCGGA TTCAGAAGAG GCGCTGGAGG CCAGCCTCGA GTTCGTGCGC
GACCTGCGGT ATGCGGGACG GTTCCATGAC TCGGTGGAAC TTGCCCGCGA CACCCGGGAC
CGCTACCGGC GGATCCTGGG ACCGGACGAC CCGGAGACGA TCTCCGCCTC CCACGTCTAC
GCCTACGCCC TCCTGCTCGC CGGAGACCAT CGGAGAGCCG CCGACCTCTT CTGGGAGATC
TACCAGACCA ACGAGATGAT CCTAGGGCCC AATAATCCCT CTACATTGGC GGCTGTCGAC
GGATACGCGG GCTCCCTCAT GGAGGCCGGG GACTACTTTA AGGCGCTGCG GTACCAGGAA
GACAACACTG AGCGGATCTA TTCGCTTTTC GGCATCAACC ATCGGGGCAC GCTGGAGAAT
ATGGCAGCTC TCGCTGCCGT ACTTCGCCGT ACCGGAAACC TGGAGCGGGC GGTCAAGATC
TCCGGGGAGG TCTGGCGAGA AACAAAAGAC CGGTTCGGTG AAGACAGCAT GATTGCGGTG
GTTGCGGCTG CCAACCACGC CGCAGCCCTG CGGTCAGTCA ACCGCTATCA CGAAGCTCTG
GACCTCGTGG AGAAGGCGTA TCGCCGTTGC GCCGAACTCC TCGGCGAAGA CCACCCCCAT
GTCGCCGCGA TCAACGTCAA CCGGGCGGTG GTCCTACGCC AGATGGGCAG AACTGAGGAA
GCCCGGGTGA TCGATGAGCG GGCGTTGCAG GTGCTCACGG ACCGGCTCGG GGAGTACCAC
ACCAGCACAC TTTCCAGCGC GCTCAATCTG GCCAGCGATT TCTTTGGCCT CGATGATGTC
GCTGAGTCGG TGCGGCGCGA CACGGAGACG CTGGCACGCT GCCGGAGAGC CCTCTCCGAG
CGGCACCCCC TCACCCTGTT GGCCCGGCGC AACCTCGTCC TTGGCCGCAA AGCCATGAAC
GAGGACGTGG CAGAGGAGAT TGCCGCCGTC GAACGGTTGT ATGCCGAGGT CATGGGGGAT
CAACATCCCG CGACACTGTC AATGCGTCGG AGAGAGCGGG GAAACGCTGA CCTTCACCTC
AATAACCTGT GA
|
|---|
| Protein sequence | MTSRRSHETP QGPDPRSPGA APAYREAPPA LTGRELADAV YLAAWQQHTA QHPPARPSGG
KDTALYAPSR VRGALLARPS QQRHDPKRRR HRVRGALLAR PSGGKDTAPA AGPQRPGTDP
SAAVLGAAEK TAGTEPPRLP PAPAPPSGAL RPHPSPLLHR SALYQALRPF RLAATDPWQH
SYDAEETARG YARRLLASPH PGGGHRPVAV TPQWAPFVRP GVQLTVLVDE SVSMLFHQDQ
VNDFIGLVRS SGVFRGVRVE RFTSDSADPA PVPAAGWGAS SGKDPGGIHI AVVLSDGIGE
GWARGSVQSW LGCLAQRLPV AIIHLLDPRQ WSRTGIRPAA MELTVAAHLG RAPANRHYTA
RPFQWPDGLP LPEPEFPHSA LSVVLPVLAS RPEMIHAWAR FVMGTRQRTL NAGALRVVPG
DTAANAAGER PTAAPTPEAR VRRFRRDSSE TAFQIAVDLA AVPLTEPVIA AVCQRFAGHP
QPSELIEVLF SGLVTEVDSP VVTPERRIRW EYRRGVREAL LSLGGRRSRI RRTLADIAAE
FAGYDPWFAL LRRILDDSPV GELPELDETS LRLAADTLPA LESIGLADLH HGLVYRIKEQ
MLAHQGAGHP DDWSDTLLEI APTGPLVPGS SGQHGTTASE RVPHAPHPTE TPSNSASDES
SMMSQRSVSI SDNFPGGSGS TGIGAGRNTS LSAIWGGDIP PRNALFTGRD DLILRLREQL
RSSSEEGRMT PSVLKGMPGI GKTQLATEYL YRFRDEYDLV WWVRGGQTHQ IHEAYTLLAQ
ELDVFRDNTS INSTIHSVRE ALRRGKPRSR WLLIFDDVRQ PDDIMRYLPI AGPGHVIITT
RNLTWPEGGY FKTLPVEVFS LQESVALLSK CGLVGFSKHE AAELAEELGH MPIALRQAAA
WMNDSATTIA EYLEFYRDKQ AQLAPMFAPA DPDYPETVIT ALNVSLDRLA VTNPAALQLL
QVCSFFSTAP IPRSLFRHAQ DVAAPPELEA ALQEPNKLHR AFSDIGRYGL AVLNHRTRTV
QVHRLVQQAL RVPLTADDQE QRRHCAHLLL AKNDPQDTSS PGARIRYAQL LPHVWATEAW
DCTDSWVRRL VLQEIYVTDL RGEHSDSKQL AEATLSVWRE KLGKTAPETL RAELYLVRAL
RNLGERKRAY ELCERVLRIL TEQHGPDSEE ALEASLEFVR DLRYAGRFHD SVELARDTRD
RYRRILGPDD PETISASHVY AYALLLAGDH RRAADLFWEI YQTNEMILGP NNPSTLAAVD
GYAGSLMEAG DYFKALRYQE DNTERIYSLF GINHRGTLEN MAALAAVLRR TGNLERAVKI
SGEVWRETKD RFGEDSMIAV VAAANHAAAL RSVNRYHEAL DLVEKAYRRC AELLGEDHPH
VAAINVNRAV VLRQMGRTEE ARVIDERALQ VLTDRLGEYH TSTLSSALNL ASDFFGLDDV
AESVRRDTET LARCRRALSE RHPLTLLARR NLVLGRKAMN EDVAEEIAAV ERLYAEVMGD
QHPATLSMRR RERGNADLHL NNL
|
|---|
| |