| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0387 |
|---|
| Symbol | |
|---|
| ID | 3578871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 431084 |
|---|
| End bp | 433819 |
|---|
| Gene Length | 2736 bp |
|---|
| Protein Length | 911 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637684073 |
|---|
| Product | bifunctional preprotein translocase subunit SecD/SecF |
|---|
| Protein accession | YP_288448 |
|---|
| Protein GI | 72160791 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF
[COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.807363 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACTAGTT CACCGGGATC GGGGGCGCGC TGGCTCCGCG CGCTCATATC CCTGCTCATC
ATGGCCGGCG CGTTCACTGC CGGCTGGTTC CTGAAGCCGA AGCTCGGGCT CGACCTGAGC
GGCGGCACCC AGATCGTCTT GGAAACCCGG GACGCCGAGG ACGGCACCAA GGCCAACGCG
TCCAACACTG ACCTCGTCGT CGAGGTGCTG CGCAACCGCA TCGACTCGCT CGGGGTCAGC
GAAGCCACCC TCTCGCGCTC CGGGGAGAAC CGGATCATCG TCGAACTCCC CGGTGTGCAA
GACCCCACCG AGGCCGCCGA AGTGCTGGGG CAGACCGCCC AGTTGACCAT CCACCCGGTG
CTGGGCGTGG ACCAGAGCAT CGGCACCACG GGCGGCGGGA TGTTCGGCGA CTTCCGCAAC
GCCCCAGCTG ACAACAGCGC GGAAGCCTCC GACTCCGAGG CGCAGGAGGA GGAGAGCCCG
GCCGAAGACG AGGAAGGCTC GGAAGAGTCC ACCGAGTCCG GGGAAGAAGC CGAGGCCGTC
GACCCGGAGG ACATCGCGCT GACCCTGCCC GACGAGTCCG GCACCCTGCT CCAGTTGGGC
AAGCCCGCGC TCACCGGCGA CCAGGTGGAC CGGGCTGAGG CCACGCTCAA CGAGCTGCAG
ACCGAGTGGC TGGTCAACGT CGAGTTCAAG GGTGCTGGCC GGGAAGCCTG GAAGAAGCTG
ACCGGTGAGG CTGCCTGCCA CTCGCCCGGC GACCCGCGGC GGCGTATCGC GATCGTCCTC
GACAACGAGA TCATCTCCGC GCCCGAGGTG GACGCGAACG ATGTGGCTTG CAACGTCGGC
ATGTCCGGTG GCCGCACCTC GATCACCGGC GGGTTCGACG CTGAAGAGGC CAAAGAGCTG
GCCCTGCTGA TCGAAGGCGG TTCCCTGCCG CTGCCCGTGG AAGAAGTGCA GCGGCAGACG
GTCGGCCCGA CCCTGGGTGC CGAGGCCATC AAGGCCAGCT TCATCGCCGG TCTCATCGGT
ATCGCGCTGA CCGCGATCTA CATCAGCATC TCCTACCGGT TCGCGGGCTT CCTCGCCTCG
GTGGCGCTGC TGTGCTACAC GGTCATCGCC TACGCGGCGC TGGTGGCGCT GGGTGCCACG
CTCACCCTGC CGGGTCTGGC CGGTTTCGTC CTGTCCATCG GTATGGCGAT CGACGCCAAC
GTGCTGATCT TCGAGCGGAC CCGCGAGGAG TATCAGCGGC AGGAGAAGGT CTACCAGGCC
AACAAGTCCG CGGGCATGCT GGACGCCACC GAAAAGGAGC AGGACGAGGC GGCTGCCGGC
GTGGTAACCC GCCGTCGCCG CCGCGCGATC CCGCCGAACC TGCTCAAGTC GTTCACGGTC
GGTTCGCAGC GGGCGTGGAG CGCGGTGCTG GACACCAACA TCACCACGCT CATCGCTGCG
GTCCTGCTGT TCTTCCTCGC CTCCGGTACC GTCCAGGGCT TCGGTGTGAC CCTGGGCCTG
GGCACGATCG CGTCGATGAT CTCGGCGCTC CTCATCGCCC GCGTGCTCAT GGAGTGGACG
GTGTCCCGCT TCACTCCGCT GCGCCGGCTG TGGCTGATCG GTGCCGCGGC CGTGGTCGTG
GGCCTGGTGG CGGTGCTGTC CGACGGGCTG CGTGTCGACA ACGTGCTGCT GCTCGTCTCC
GGCGCGCTGG GTGTGCTCGC GGTCTCTGTG GCGATCATTC CGCTGATCGT GCGGAAGTTC
CCGCGGAGCA GCGGTATCGC CCACATCAGC GCGGTCCGCA AGTGGCTGGT GGAGCACAAC
CCGGACCTGA TGAAGCGCAG CACGCTGTGG CTGGGCATCA CCGGTGTCGT CACCGTGCTG
GCGCTGCTCG GCTTCGCGGT GCGCTCCCCC AACCTGGGTG TGGAGTTCAC CGGCGGCCGG
GTGATGACCT TCTCCGTCAC CGAGGAGCTC AACGCCGACC AGGCGCGGGA GCTTGTCGCG
GGCGCGGGCT ACGCGAACGC GGTGGTCCAG GAGGTCGAGG GCGGCGAGAT CTCCGTGCGC
ACCGGGCACA TCTCCGACCA GGAGGCCGCG AAGATCCAGG ATGCCCTCGC CGAGGAAGGC
GGCGAGGTCG AGCGGACCAG CGACGAGAAG ATCGGCCCGA GCATGGGCAG CGAGCTGCGC
AACAAGGCGC TGATCGCGCT GATCGTGGCG CTGGTGCTGC AGATGGCCTA CCTGGCGTGG
CGGTTCCGCT GGTCGTTCGG CTTGGCGACC ATGCTGGCGC TGGCCTTCGA CATCATCCTG
GTGATCGGCC TGTTCGTGTG GCTGGGTAAG CCGATCGACG GCGTGTTCCT CGCCGCGCTG
CTGAGCATCA TCGGTTTCTC GGTGAACGAC TCGGTGGTGG TGTTCGACCG GGTGCGCGAC
GAGTGGGCGC ACAAGCCGAA GGGCGACTTC CGCGAAATCG CGAACTCGTC GGTCCTGCAC
ACGCTGCCGC GGACCGTGAA CTCGGGTATC GGCGGCCTGT TCATCCTGGC CGCGCTGGCG
GTGCTCGGCG GTTCGTCGCT CACCGACTTC TCGATCGCGA TGCTGGTCGG TTTGATCTCC
GGCATCTTCT CCACGGTGTT TGTGGCGGTG CCGCTGGCGA TCTGGTTGCA GCGGTTCGAC
CGGACACCGC CGCCGCACGA GGTCAAGGAG CGCAAGACCA AGCAGCGCAA GCAGCAGCGT
GCGATCCGGG AGCGGACCGA CGGCGCCGTC GTGTAG
|
|---|
| Protein sequence | MTSSPGSGAR WLRALISLLI MAGAFTAGWF LKPKLGLDLS GGTQIVLETR DAEDGTKANA
SNTDLVVEVL RNRIDSLGVS EATLSRSGEN RIIVELPGVQ DPTEAAEVLG QTAQLTIHPV
LGVDQSIGTT GGGMFGDFRN APADNSAEAS DSEAQEEESP AEDEEGSEES TESGEEAEAV
DPEDIALTLP DESGTLLQLG KPALTGDQVD RAEATLNELQ TEWLVNVEFK GAGREAWKKL
TGEAACHSPG DPRRRIAIVL DNEIISAPEV DANDVACNVG MSGGRTSITG GFDAEEAKEL
ALLIEGGSLP LPVEEVQRQT VGPTLGAEAI KASFIAGLIG IALTAIYISI SYRFAGFLAS
VALLCYTVIA YAALVALGAT LTLPGLAGFV LSIGMAIDAN VLIFERTREE YQRQEKVYQA
NKSAGMLDAT EKEQDEAAAG VVTRRRRRAI PPNLLKSFTV GSQRAWSAVL DTNITTLIAA
VLLFFLASGT VQGFGVTLGL GTIASMISAL LIARVLMEWT VSRFTPLRRL WLIGAAAVVV
GLVAVLSDGL RVDNVLLLVS GALGVLAVSV AIIPLIVRKF PRSSGIAHIS AVRKWLVEHN
PDLMKRSTLW LGITGVVTVL ALLGFAVRSP NLGVEFTGGR VMTFSVTEEL NADQARELVA
GAGYANAVVQ EVEGGEISVR TGHISDQEAA KIQDALAEEG GEVERTSDEK IGPSMGSELR
NKALIALIVA LVLQMAYLAW RFRWSFGLAT MLALAFDIIL VIGLFVWLGK PIDGVFLAAL
LSIIGFSVND SVVVFDRVRD EWAHKPKGDF REIANSSVLH TLPRTVNSGI GGLFILAALA
VLGGSSLTDF SIAMLVGLIS GIFSTVFVAV PLAIWLQRFD RTPPPHEVKE RKTKQRKQQR
AIRERTDGAV V
|
|---|
| |