Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_0287 |
Symbol | |
ID | 3578884 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | + |
Start bp | 323675 |
End bp | 325906 |
Gene Length | 2232 bp |
Protein Length | 743 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637683971 |
Product | protein phosphatase 2C-like protein |
Protein accession | YP_288348 |
Protein GI | 72160691 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.575817 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCACACA GTGTCACGAA AACCGTCCGC CGAGAGTTCT CACCCACCCC GGAAACGGTG GGGGAGGCAC GCACGTTCGT CAAAGACACA CTGCAGCACT GGGAGGTGCA GCGGAGCGCA GACGAGATCG TCCTGCTGAC CAGCGAACTC GTCACCAACG CGGTCGTCCA CGCGAAGACG ACCCTGGAAC TCACCGTAAG CCTGATCGGC AGCGATGTCG AGGTGGTGGT CGCCGACCGG GTGCCGCATC AGGCGCTGCC CAAAGCCGGT CCCCTCCGTG TCGTCCTCTC CTCAGACGAG GACAGCCGTG GCGGCCTGGG CCTCGCTTTA GCGGAGGCGA TCGCCGACAC GTGGGGAGTC AGCTACAGCA GGGACGACAA AGCAGTCTGG TTCCGGATCT CGACTCAGGA ACGCACTAAA GAAACCGCAC GCTCCTCCTT GTCGCCGCCG CGGAGCATCC GCAGCCACCC ACGCTCCAGC CCGCCGGAAC CGTGGGCGCG CCTCGACGCG TTGCTCTCCG CACGGCTGTC CCCCTCGGAA CTCCTGGAAC GGATCGTGGA GCACGTCCGC GTGGTGCTCG GCGGAGACGC CGCCTATATC GCGCTCGCCA CCGCCGACCA CACCGAATGG GAGATGGCTG CCGCGGTCGG ACTCTCCGCA GGCCCGTGGC GGCCGTTCCG CAGCCGCATC GAAGAGACTT TCCCCGCTGC CACCCCGGAA GCCCGGCCGA TGATCAACGA CGACTTGATG ATCGCCAGCG CCCACCGGGG AGTGCTCGCC GCCGCAGGAA TGCGGTCCCT GGTCACCGCA CCGCTCAGTG TCGACGGCAG GATCACCGGG CTGATCGGGG TCGCTTCCCG CCGGGTCCGC CACTTCGGGA AGAACGCGGC CCGCCGCCTC CAAGAAGCCG CTGACCGGAT CGCCCTCACC GTGGAACGCG CCCGCCTCGC CCAAGTGGAA ATCCACCGGC GGGCCGCGCT CAGTTTCCTC GCCGAAGCCA ACGACCTGCT GTCCGGGACG CTCGACGAGC AGATGACCGC GGCGCTCGCC GCACAGCTCA GCACGTCGCG GCTGGGCCAC TGGTGTGTGG TGCACACGGT CGACGAGCTG GGCACCCACC AGTTGGCGTT CGCCATGCAC CGGGACGAGA ACGTCACCGA CATCCTCCGC GACCTGGTGA CCGCGCTCAT GCCTGAAGAG CGGCGGGACC CTGGGCCGCT GTGGCCGGTC GAGAAAGTGG TCGCGGCCGG CCTGGGGGAC GAGCTCAGCC TGGAGCTTGC CCAAGGGCCG GGGATCAGCC TGCCGCTGAC CGCGTACGGC CGCATCCTGG GCCGGATCAC GATCGGGCGG GACGTCGGCG AAGACTTCCC GAAAGAGGAC GTGGACCTCG CCGCCGACCT GGCCCAGCGG GTCTCCTCGG CCATGGAGAA CGCGCGGCTG TATTCAGCGC AGACGTCCAT GAGCGAAGCG TTGCAGCGCA GCCTGCTACC CGCCCGGGAG AAGCAGCCCG TGGTTCCCGG CGTGGACTAC GCGGTGTTCT ACCAGCCCGC TGGGGAGCGC ACCGTGGTGG GCGGGGACTT CTACGACCTG TTCGCCACTG ATGGGCGCTG GTGTTTTGCG ATCGGGGACG TGTGCGGGAC CGGCCCGGAG GCCGCCGCCG TCACCGGACT GGCCCGGCAC ACGCTGCGTG CCCTGGCCCG GGAAGGCTTC TCCCCCGCGC ACATCATGCA CCGGCTCAAC TTCGCGATCC TGGAAGAAAG CCTCACCATC CGGTTTTTGA CCATGCTGTA CGGGGAGATG ACCCCGATCG GGCCGAACGC GGAACGCGGG ATGCACATCC GGCTCGTCTC CGCCGGGCAT CCACTGCCGC TGCGGTTGAA CCGCCACGGC GAGGTCACCA CGCTGGCGAC CTCTCAACCG CTGCTGGGGG CTTTCGAGGA CGTGGAGTTC TTCACCGAAA CCGTGGAGGT GGAGCCCGGC GATGTCCTGC TCGCGGTGAC CGACGGGGTT ACCGAGCGGC GCAACGGCGA CGAGATGCTC GGCGATGAAG GACTGGTGGA GATCTTCTCC CGGTGCTCTG GGTTGACCGC GCAGGCGGTC ATCTCCCGTA TCGGCCGGGA ACTGGAGGCG TTCGCGCCGG GCGGGCACAC CGACGACACG GCGATGCTTG TGCTGCGGTT CCTCGAACCT CGCCCTGCGG AGCAGCAGGA GCGGATGCTG CTCGGCGGGT GA
|
Protein sequence | MPHSVTKTVR REFSPTPETV GEARTFVKDT LQHWEVQRSA DEIVLLTSEL VTNAVVHAKT TLELTVSLIG SDVEVVVADR VPHQALPKAG PLRVVLSSDE DSRGGLGLAL AEAIADTWGV SYSRDDKAVW FRISTQERTK ETARSSLSPP RSIRSHPRSS PPEPWARLDA LLSARLSPSE LLERIVEHVR VVLGGDAAYI ALATADHTEW EMAAAVGLSA GPWRPFRSRI EETFPAATPE ARPMINDDLM IASAHRGVLA AAGMRSLVTA PLSVDGRITG LIGVASRRVR HFGKNAARRL QEAADRIALT VERARLAQVE IHRRAALSFL AEANDLLSGT LDEQMTAALA AQLSTSRLGH WCVVHTVDEL GTHQLAFAMH RDENVTDILR DLVTALMPEE RRDPGPLWPV EKVVAAGLGD ELSLELAQGP GISLPLTAYG RILGRITIGR DVGEDFPKED VDLAADLAQR VSSAMENARL YSAQTSMSEA LQRSLLPARE KQPVVPGVDY AVFYQPAGER TVVGGDFYDL FATDGRWCFA IGDVCGTGPE AAAVTGLARH TLRALAREGF SPAHIMHRLN FAILEESLTI RFLTMLYGEM TPIGPNAERG MHIRLVSAGH PLPLRLNRHG EVTTLATSQP LLGAFEDVEF FTETVEVEPG DVLLAVTDGV TERRNGDEML GDEGLVEIFS RCSGLTAQAV ISRIGRELEA FAPGGHTDDT AMLVLRFLEP RPAEQQERML LGG
|
| |