Gene Tfu_0106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTfu_0106 
Symbol 
ID3579686 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermobifida fusca YX 
KingdomBacteria 
Replicon accessionNC_007333 
Strand
Start bp128454 
End bp130466 
Gene Length2013 bp 
Protein Length670 aa 
Translation table11 
GC content65% 
IMG OID637683789 
ProductPAS protein phosphatase 2C-like 
Protein accessionYP_288167 
Protein GI72160510 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCGACC TGGCCCCTAT CGGGGTGTCC ATCACCCGTG GCCCCGACCA CCGCCTGGTC 
TACGTCAACG AAGCACAACG AGCCATATTC GGCCCGCGCC CACTCGGCAA ACCCCTGCTG
CAAGCCTTCA ACGACCTTGC CGAAGCGGGA TACATCCTTG TCCTCGACCA GGTCATGACC
ACCGGGAAAC CCGAATTCCT CCCCCAAGTC CCCGTAACCG TCAACTATCC CAACGCCGGC
CGCCAAGAAC GCTACTTCAA CCTCAGCTTC ACCCCGGTGT TCCTGGACGA CGGAGAACCC
GCAGTACTGA ACCTGATCGC GGACGTCACC GAAACCATCG ACGCCGCCCA GCGGAAACGC
GCCCTCCAGC GGTACACCAG CATCGTCCGC TCCGGGAGCC TGGTGGAATG GAGCGCCTCC
CCCATCGACG GCTCCCTGCA ATGGATCCGC GGCTGGGAGG AGATCACTGG GCAACCCCAC
GAAGAATCCC GAGGCCACGG CTGGTTGAAC ATGGTCGCCC CAGAAGACAG GGCCGCGCTG
CTCGCGTCCT GGCTACGGGC AATCGACGAA GTCCCCGACT CTGTGGAGTA CATCTTCCGG
GTACGAACAC GCGACGGCAC CTACCGGCAC TTCCGTGCCC ATGCCGTCCC CGTCCGAGAA
AACGGGGTCG TCGTCGAATG GACCGGCACC TGCGCCGACG TGGAACAACA ATGGCGGGAG
CAGCGCCGCC ACGCCCTGTT CAACCGTGCC TCTGGGGCGA TCTCCAACAC CGCCCTCATC
GAAGACATGC TCAAGGCGTT ACCCGAGGTC ATCGTGCCCG AGGTCGCCGA TGTGTGCACG
GTCCACCTGT TGTCCCCCAC CTCATCGCCT GAAACATCAG CGAACCCGTT CATTGTGGAA
CGCCTGGCGA CCAAAGCCCG GGAAGGGATC ACCGTGCCGC CGCCACGGTT CCAGTCACGC
TTCACCATCC GAAGCACATA CCTCGAGTTG ATCCGGCAGA AGCGCTCCAT CCACCGGGTG
TTCCCGGTAG GAAAGCCGCC CTTGGACCCT CTCAGCCCGA ATAGCTCGCG GTGGCTCCGC
CAAGTCAAAG CCAACAGCGT GGTCATGCTC CCCATCACGG TCGAGGGGGA ACTCGTCGCT
AGCCTGGTCG CAGTCGTCTG CGGGGAACGC GAACCGCTGA CTCAAGACGA CGCGGACCTC
CTGGCGGACC TCATCGACCA CCTCCAGCCC ACCATCGACA CGTTCGCGAG CTTCCAACGC
ACCCAACGGG TCGCGAGAGC CCTCCAGCAC AGCCTGCTCA GCGATCCCCC CACCATCCCG
GGTCTCCCTA TCGTCGGCCG CTATCAGACC AGCCCTACTT CCGCGGAGGT GGGCGGTGAC
TGGTACGACG CGTTCATCGT CGACGACACG ATCATGCTCG TTATCGGGGA CGTGGCCGGA
CACGACCTGA CCGCGGCCAC CGCCATGAGC CAGATGCGCA ACATGCTCCG CGCTTTCGCC
GCCGACCACC CGCACAACCC TCACGAAGTG CTACGCCGCC TGGACGGCGC AGTGCAACGC
TCCGGGGAGT ACAAAGGGAC GGCCACCTGC ATCCTCGCCC GGGTCACCCC AGACAGTGAC
GGCATCTGGC AGGTGGACTA CTCGGTGGCC GGACACCTGC CGCCGCTGCT CGTTCTCCCG
AACGGGGAGA CCCGCTTCTT GGAGAAAGCC CACGACCTTC TCCTCGGCGT GGACCCCACA
ATGCCGCGCC ACCGGGCGCT CGAAGTCCTG CCCTCGGGAG CCACCCTGCT GCTCTACACC
GACGGTCTCG TGGAACACCC CCACGAGTCT CTCGATATCG GGTTGGAGCG GCTGGCCCAC
CACTGTGCCG CCATGGCCCG GATTCCCCTC AACACGTTCT GCGACCGGCT CCTCACTGAG
CTGCCTATCG CCGGAAACGA CGACATCACT TTGATCGCGT TGCGGTTGGA GTCGCCTACC
CTGGCCACAG CCTCCCTGGC CCGGCACGGC TGA
 
Protein sequence
MFDLAPIGVS ITRGPDHRLV YVNEAQRAIF GPRPLGKPLL QAFNDLAEAG YILVLDQVMT 
TGKPEFLPQV PVTVNYPNAG RQERYFNLSF TPVFLDDGEP AVLNLIADVT ETIDAAQRKR
ALQRYTSIVR SGSLVEWSAS PIDGSLQWIR GWEEITGQPH EESRGHGWLN MVAPEDRAAL
LASWLRAIDE VPDSVEYIFR VRTRDGTYRH FRAHAVPVRE NGVVVEWTGT CADVEQQWRE
QRRHALFNRA SGAISNTALI EDMLKALPEV IVPEVADVCT VHLLSPTSSP ETSANPFIVE
RLATKAREGI TVPPPRFQSR FTIRSTYLEL IRQKRSIHRV FPVGKPPLDP LSPNSSRWLR
QVKANSVVML PITVEGELVA SLVAVVCGER EPLTQDDADL LADLIDHLQP TIDTFASFQR
TQRVARALQH SLLSDPPTIP GLPIVGRYQT SPTSAEVGGD WYDAFIVDDT IMLVIGDVAG
HDLTAATAMS QMRNMLRAFA ADHPHNPHEV LRRLDGAVQR SGEYKGTATC ILARVTPDSD
GIWQVDYSVA GHLPPLLVLP NGETRFLEKA HDLLLGVDPT MPRHRALEVL PSGATLLLYT
DGLVEHPHES LDIGLERLAH HCAAMARIPL NTFCDRLLTE LPIAGNDDIT LIALRLESPT
LATASLARHG