Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_0106 |
Symbol | |
ID | 3579686 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | - |
Start bp | 128454 |
End bp | 130466 |
Gene Length | 2013 bp |
Protein Length | 670 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637683789 |
Product | PAS protein phosphatase 2C-like |
Protein accession | YP_288167 |
Protein GI | 72160510 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCGACC TGGCCCCTAT CGGGGTGTCC ATCACCCGTG GCCCCGACCA CCGCCTGGTC TACGTCAACG AAGCACAACG AGCCATATTC GGCCCGCGCC CACTCGGCAA ACCCCTGCTG CAAGCCTTCA ACGACCTTGC CGAAGCGGGA TACATCCTTG TCCTCGACCA GGTCATGACC ACCGGGAAAC CCGAATTCCT CCCCCAAGTC CCCGTAACCG TCAACTATCC CAACGCCGGC CGCCAAGAAC GCTACTTCAA CCTCAGCTTC ACCCCGGTGT TCCTGGACGA CGGAGAACCC GCAGTACTGA ACCTGATCGC GGACGTCACC GAAACCATCG ACGCCGCCCA GCGGAAACGC GCCCTCCAGC GGTACACCAG CATCGTCCGC TCCGGGAGCC TGGTGGAATG GAGCGCCTCC CCCATCGACG GCTCCCTGCA ATGGATCCGC GGCTGGGAGG AGATCACTGG GCAACCCCAC GAAGAATCCC GAGGCCACGG CTGGTTGAAC ATGGTCGCCC CAGAAGACAG GGCCGCGCTG CTCGCGTCCT GGCTACGGGC AATCGACGAA GTCCCCGACT CTGTGGAGTA CATCTTCCGG GTACGAACAC GCGACGGCAC CTACCGGCAC TTCCGTGCCC ATGCCGTCCC CGTCCGAGAA AACGGGGTCG TCGTCGAATG GACCGGCACC TGCGCCGACG TGGAACAACA ATGGCGGGAG CAGCGCCGCC ACGCCCTGTT CAACCGTGCC TCTGGGGCGA TCTCCAACAC CGCCCTCATC GAAGACATGC TCAAGGCGTT ACCCGAGGTC ATCGTGCCCG AGGTCGCCGA TGTGTGCACG GTCCACCTGT TGTCCCCCAC CTCATCGCCT GAAACATCAG CGAACCCGTT CATTGTGGAA CGCCTGGCGA CCAAAGCCCG GGAAGGGATC ACCGTGCCGC CGCCACGGTT CCAGTCACGC TTCACCATCC GAAGCACATA CCTCGAGTTG ATCCGGCAGA AGCGCTCCAT CCACCGGGTG TTCCCGGTAG GAAAGCCGCC CTTGGACCCT CTCAGCCCGA ATAGCTCGCG GTGGCTCCGC CAAGTCAAAG CCAACAGCGT GGTCATGCTC CCCATCACGG TCGAGGGGGA ACTCGTCGCT AGCCTGGTCG CAGTCGTCTG CGGGGAACGC GAACCGCTGA CTCAAGACGA CGCGGACCTC CTGGCGGACC TCATCGACCA CCTCCAGCCC ACCATCGACA CGTTCGCGAG CTTCCAACGC ACCCAACGGG TCGCGAGAGC CCTCCAGCAC AGCCTGCTCA GCGATCCCCC CACCATCCCG GGTCTCCCTA TCGTCGGCCG CTATCAGACC AGCCCTACTT CCGCGGAGGT GGGCGGTGAC TGGTACGACG CGTTCATCGT CGACGACACG ATCATGCTCG TTATCGGGGA CGTGGCCGGA CACGACCTGA CCGCGGCCAC CGCCATGAGC CAGATGCGCA ACATGCTCCG CGCTTTCGCC GCCGACCACC CGCACAACCC TCACGAAGTG CTACGCCGCC TGGACGGCGC AGTGCAACGC TCCGGGGAGT ACAAAGGGAC GGCCACCTGC ATCCTCGCCC GGGTCACCCC AGACAGTGAC GGCATCTGGC AGGTGGACTA CTCGGTGGCC GGACACCTGC CGCCGCTGCT CGTTCTCCCG AACGGGGAGA CCCGCTTCTT GGAGAAAGCC CACGACCTTC TCCTCGGCGT GGACCCCACA ATGCCGCGCC ACCGGGCGCT CGAAGTCCTG CCCTCGGGAG CCACCCTGCT GCTCTACACC GACGGTCTCG TGGAACACCC CCACGAGTCT CTCGATATCG GGTTGGAGCG GCTGGCCCAC CACTGTGCCG CCATGGCCCG GATTCCCCTC AACACGTTCT GCGACCGGCT CCTCACTGAG CTGCCTATCG CCGGAAACGA CGACATCACT TTGATCGCGT TGCGGTTGGA GTCGCCTACC CTGGCCACAG CCTCCCTGGC CCGGCACGGC TGA
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Protein sequence | MFDLAPIGVS ITRGPDHRLV YVNEAQRAIF GPRPLGKPLL QAFNDLAEAG YILVLDQVMT TGKPEFLPQV PVTVNYPNAG RQERYFNLSF TPVFLDDGEP AVLNLIADVT ETIDAAQRKR ALQRYTSIVR SGSLVEWSAS PIDGSLQWIR GWEEITGQPH EESRGHGWLN MVAPEDRAAL LASWLRAIDE VPDSVEYIFR VRTRDGTYRH FRAHAVPVRE NGVVVEWTGT CADVEQQWRE QRRHALFNRA SGAISNTALI EDMLKALPEV IVPEVADVCT VHLLSPTSSP ETSANPFIVE RLATKAREGI TVPPPRFQSR FTIRSTYLEL IRQKRSIHRV FPVGKPPLDP LSPNSSRWLR QVKANSVVML PITVEGELVA SLVAVVCGER EPLTQDDADL LADLIDHLQP TIDTFASFQR TQRVARALQH SLLSDPPTIP GLPIVGRYQT SPTSAEVGGD WYDAFIVDDT IMLVIGDVAG HDLTAATAMS QMRNMLRAFA ADHPHNPHEV LRRLDGAVQR SGEYKGTATC ILARVTPDSD GIWQVDYSVA GHLPPLLVLP NGETRFLEKA HDLLLGVDPT MPRHRALEVL PSGATLLLYT DGLVEHPHES LDIGLERLAH HCAAMARIPL NTFCDRLLTE LPIAGNDDIT LIALRLESPT LATASLARHG
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