| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3813 |
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| Symbol | |
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| ID | 3567969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 4095470 |
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| End bp | 4098361 |
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| Gene Length | 2892 bp |
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| Protein Length | 963 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637682287 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_287011 |
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| Protein GI | 71909424 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.000539796 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0501343 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTCGG AAAACGCAAT GCCCAACAAG GAAATGCAAG CCTCCGTCAA AGGAGTGACA
CTGGTGCCTG ACGATGCCAC GGAGGTTCGT CGGCAGAAAC TGGCGCGCAT CATTCTCGAT
GCGATGTACC AGTTCCTCGG CCTGCTCGAT GTCGACGGCA CGGTGCTCGA GATCAACCGG
GCCGCGCTGG AAGGGGCCGG TATCTGCCTC GATGAGGTGA TCGGCAAGCC GTTCTGGGAG
GCACGCTGGT GGGCCATCTC CGAAGAGGCC CGCAATCGCG TGCGGAGCAT GGTCGAGCAG
GCCAGGAATG GCGAATTCGT CCGTTGCGAC ATCGAGATTT TTGGCGATTT GCAGGGCAAG
AAAAGCATCT TCGTGGACTT TTCCCTGACG CCGATCCGCG ACGATGCCGG GCGGGTCGCC
TTTTTGCTGC CGGAAGGGCG GAACATCACC GAAAAGATCG CCATCGAGGC CGAACTGACG
CGCAAGAACG GCGAACTGCA GCTGGCACTG GAGAAGCTGC GGGAAATCGA TGGCTTCAAG
ACCAAGTTCT TCGCCAACGT CAGCCACGAA CTGCGGACGC CGCTGGCGCT GATCCTCGGG
CCGGTCGATC AAATGCTGCG CGAGTCCGAG CAACTGGGGG AGCGGGAACG CTTCCGTCTG
ACCACGATCA AGCGCAACGC CCAATCCCTG CACCAGCAGG TGAATGACTT GCTCGATCTG
GCCCGTATCG ATGCCCAGCA AATGCCGCTG GCCTACGTCT GCGTCAATGT CGTCGCCCTG
CTCCGGGAGG TCGCGGCCGG GTTTGCCGCT GCCGCCGAAG AGCGGGCCAT TTCGCTGATT
ATCGAGGGGG CGGACGAGCT TCAGGCCGAC GTCGACCGGG CCAAGTTCGC CCGGGTGCTG
GCCAACCTGC TGTCCAATGC CTTCAAGTTC ACCCCGGCCG GCGGGCGCAT CTGCTGTTCG
ATCACCCGCG TCGCCAACGA CCGCTTCCTG CTCAGCGTGC AGGACAACGG GCCCGGCGTG
CCGCCGCCGA TGAAGCAGCA AATCTTCGAT CGCTTCGCGC AGGGGCAGGG CGGCCTCTCC
GGCATCGGCA GCGGGCTTGG CCTGAATATC GTCAAGGAAT TCGTCGAACT GCATTTCGGA
ACGGTGGTCG TTCTCGATGC ACCGGGCGGC GGGGCGATCT TCCAGGTCGA GATGCCGAAG
CGGGCGCCCA ACGGCGTCTT CGTGCGCGAA AGCGGCGAGG GCATCGGCCT GGTCACGCCG
CAGGATATCG ATTTCCTCGA GCCGTCGAGC CACCCGGCCA GCGCCTACAA GTCAGGCACG
CCACGCATCC TGGTCGTCGA GGACAATCCC GATCTGCGCC ATTTCCTCTA CGACGTGCTG
ATCGACGATT ACAACGTGAC GCTGGCCGCC AACGGCGCCC TCGCCCTGAC CTCGGCACTG
GAAGATCCGC CGGATCTGGT GATCACCGAT TTGATGATGC CGCATTTCGA TGGCGAGCAA
TTCGTCCGCG AACTGCGGAC CAGCGGCTGC TTCCCGAATC TGCCGGTCCT CGTGCTGTCG
GCCCGGGCCG ACGATGCCCA GCGGGAAACG CTGCTCGAAG AGCTGGTTCA GGACTACCTG
ACCAAGCCGT TTTCTCCGCA GGAACTGCGG GCGCGCGTGC GCAATCTGGT CACGGTCAAA
CGGACCGTCG ACATCCTGCA GAAGGAACTC AATACCCAGG CTTCGGACGT CGGCGAACTG
ACGGCCGGCC TGGTCGCCAG CCGTAAATCG CTGCAGGACA GTCTGGTCGC GCTGCAGATC
TCGGAGCGGC GCTGGCAGGG GCTGTACCGG AATTCCGCGG TCGGCATTGC GCTGGCCGAC
CGGGAGGGAC GTATCCTGAA AGCCAATCCC GCCTTGCAGC AGATGCTCGG CTACAGCGAA
GCGGAGATTG TCGGCGTATC GTTCATCGAC ATTTCGGACG AGTCCCAGCG CGCCATGACC
CTGCGCAATG TGCACGGCCT GTTCGATGGC AGCATTGACC ACTACCATGT GCAGAAACGC
TACGAAAGAA GGGACGGCAG CTTCCTCTGG GCCAATGTCA GCGCCTCCCT GATTCCGGCG
GTCGATGTGG AAGGGCCGAG GCTGGCGGTC ATCGTCGAGG ATGTCAGTTC GCGCAAGGAG
GCGGAGAGCG CGCTGGCCGC AACGCAGACC GAACTGGCCC GGGTGTCGCG CTTCACCGCG
ATGGGCGAAC TGGTCGCCTC GATTGCCCAC GAGGTCAACC AGCCGCTGTC GGCGATCGTC
ACCAACAGCC AGGCCGCCCT GCGCTGGCTG GCCCGCGAAA CGCCGGATTA TCAGGAAGTG
GTTGCCGCCC TGAACCGGGT CAATCGCGAT GCCAGTCTGG CCGGGGAGGT CATTGCCCGT
ATCCGCAACT TTCTCAGCAT GGGCGGCATG CAGCGCGAGC GACTGGTCGT CCGCCCCATC
CTCGAGAACC TGCTGCAGAT GTTGCAGACC ATGTTGCAGG AGGCCGACGT CGAGGTTGAT
CTGCGGATTG CCCCGGGCTT GCCCGATCTG CTGGCCGATC CGGTCCAGTT GCAGCAGGTG
CTGCTCAATC TGGTGGTCAA CGCGGTCGAT GCGATGCGCG AGGAGAAGGA GCGGGCGCGC
CGCTTGAGCA TATCGGTCAG TGCAGACACG GCCGGCAGCG TCCTGTTTTC AGTCAGCGAT
ACCGGTCCGG GCATCCCGCC CGACAAGGCG GCGAAGATCT TCGATGCCCT GTTCTCGACC
AAGAGCCGTG GCCTGGGCAT GGGCCTGGCC ATCAGCCGAT CCATCGTCGA AAACCACGGC
GGGCGCCTGC GGCTGGTGCC TGAGGCCGCC GGTGGTGCTC ATTTCGTGTT CAATATTCCG
GTCCAACCAT GA
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| Protein sequence | MTSENAMPNK EMQASVKGVT LVPDDATEVR RQKLARIILD AMYQFLGLLD VDGTVLEINR
AALEGAGICL DEVIGKPFWE ARWWAISEEA RNRVRSMVEQ ARNGEFVRCD IEIFGDLQGK
KSIFVDFSLT PIRDDAGRVA FLLPEGRNIT EKIAIEAELT RKNGELQLAL EKLREIDGFK
TKFFANVSHE LRTPLALILG PVDQMLRESE QLGERERFRL TTIKRNAQSL HQQVNDLLDL
ARIDAQQMPL AYVCVNVVAL LREVAAGFAA AAEERAISLI IEGADELQAD VDRAKFARVL
ANLLSNAFKF TPAGGRICCS ITRVANDRFL LSVQDNGPGV PPPMKQQIFD RFAQGQGGLS
GIGSGLGLNI VKEFVELHFG TVVVLDAPGG GAIFQVEMPK RAPNGVFVRE SGEGIGLVTP
QDIDFLEPSS HPASAYKSGT PRILVVEDNP DLRHFLYDVL IDDYNVTLAA NGALALTSAL
EDPPDLVITD LMMPHFDGEQ FVRELRTSGC FPNLPVLVLS ARADDAQRET LLEELVQDYL
TKPFSPQELR ARVRNLVTVK RTVDILQKEL NTQASDVGEL TAGLVASRKS LQDSLVALQI
SERRWQGLYR NSAVGIALAD REGRILKANP ALQQMLGYSE AEIVGVSFID ISDESQRAMT
LRNVHGLFDG SIDHYHVQKR YERRDGSFLW ANVSASLIPA VDVEGPRLAV IVEDVSSRKE
AESALAATQT ELARVSRFTA MGELVASIAH EVNQPLSAIV TNSQAALRWL ARETPDYQEV
VAALNRVNRD ASLAGEVIAR IRNFLSMGGM QRERLVVRPI LENLLQMLQT MLQEADVEVD
LRIAPGLPDL LADPVQLQQV LLNLVVNAVD AMREEKERAR RLSISVSADT AGSVLFSVSD
TGPGIPPDKA AKIFDALFST KSRGLGMGLA ISRSIVENHG GRLRLVPEAA GGAHFVFNIP
VQP
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