| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2825 |
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| Symbol | |
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| ID | 3566465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 3033482 |
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| End bp | 3035128 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637681294 |
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| Product | PAS:GGDEF |
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| Protein accession | YP_286025 |
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| Protein GI | 71908438 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 0.067576 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCCC TACGAATACT CTTGGCCGAC GACAGCGTGG CCATAGGCAC ACTTATCGGA
GAGCAGCTTC GGAGCAACGG GCACATCGTC ACGTTTGTGC AAAGCGGCGA AGAGACGATT
GCCGCCTGTC GGGAATCGTT GCCCGAACTG ATTCTGATGG ACATCGAAAT GCCCGGCATG
GGCGGCCTTG AAGCCATCAA GCAGATCCGG AAAATTCCGG CACCGTTCCG GGTGCCGATC
ATCACCGTCA CCAGCCACAC CGATGAAGCC AACCTGCTGA GCAGTTTCAT GGCCGGCGCT
GACGACTACA TCATCAAGCC GATCCAGCCC CTGCTCCTCG ACATCCGCAT CCAGGCCATG
ATGCGGGTTG TCGCGGATCA GCGCTCAGCG GCTGCGATGA TCGACAACAT GCTCGAAGGC
GTCATCCGGA TCGATCGGGT CGGCCGAATT TCGGCCTTCA ACAAGGCTGC CGAGAATATC
TTTGGTTACA CGGCAAGCGA GGTGCTGGGC AACAACGTAA AAATGCTGAT GCCTTCGCCA
TATCGGGAAG AGCACGACGA CTATCTGGGC AACTACGCGG CGACCGGCGA ACGCAAGATT
ATCGGCACTG GCCGCGAGGT TAGCGGACTG CGCAAGAGTG GTGAGATCTT CCCGATGCAG
TTGGGCGTTA CCGACGTCGC GACCCCGGAC GACCGTTTTT TTGTCGGATT GATCCGCGAC
CTGAGCAGTG AAAAAATGCT GCGCAAGCGA CTTGCCGAGA GCCGAAACTT CCTGGCCGAC
GTCATTGAGC ACAGCCCTTC GGCGACTTAC GTCAAGAGTC GCGAAGGACG CTACCTGCTG
GTTAACCGCA AGCATGAGGA AGTCACCGGT CTGTCCCGCG CCCAAGTGCT GGGCAAGACG
GACGCCGAGA TATTCCCGGC AGCTGCTGCA GAGGCCTACC GGCGCGTCGA CCTCGAGGTA
ATGGCTAGCG GACACACGGT CGAGGCCGAA GAAAAATTAC ATAAGGGGCA AGGAGAGGCC
TTCTTCCTGT CAGTCAAGTT CCCGACGCGG AACAGTTCAA ACGAAATTAC CGGCATTTGC
GGCATATCCA CCGACATTAC GCCAATCAAG CACTACCAGA AGGAACTTGA GCGCCTGTCA
CAATTTGATG AACTGACCAA TCTGTTCAAT CGACGCCACT TTTTCAGCCT TGCCAAGCAT
GAACTGAACC GCAGTTCGCG TTATCGAAGC AAGCTGTCGG TCATGATGCT GGACATCGAT
CACTTCAAGC GGATCAACGA TGGCCACGGC CATAAAACCG GGGATCTGGT GCTCGCCAAT
ATCGGCAAAC AGATCGGGGA CTCCTTGCGC GACAGCGATA TTGCCGGACG CATGGGCGGC
GAGGAATTTG CCATCCTGCT CCCGGAAACC GATCTCGAAC AAGCCAGCAT CATGGCCGAA
CGACTGAGAA AGCAGGTCGC GGAAACATGG CTCGACATTG GCGATGGCCG CACCTTGAAC
TGCACACTGT CGATCGGTCT CGCGACCAAG TCAGACCAGC AGATCGACCT CGAGAACCTG
CTCCATCAGG CCGACACTGC GCTCTACGCG GCAAAGAACT CGGGCCGCAA CAAGGTCAGT
TGCGCCGACC GGAATCGTCC GGCGTAA
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| Protein sequence | MNPLRILLAD DSVAIGTLIG EQLRSNGHIV TFVQSGEETI AACRESLPEL ILMDIEMPGM
GGLEAIKQIR KIPAPFRVPI ITVTSHTDEA NLLSSFMAGA DDYIIKPIQP LLLDIRIQAM
MRVVADQRSA AAMIDNMLEG VIRIDRVGRI SAFNKAAENI FGYTASEVLG NNVKMLMPSP
YREEHDDYLG NYAATGERKI IGTGREVSGL RKSGEIFPMQ LGVTDVATPD DRFFVGLIRD
LSSEKMLRKR LAESRNFLAD VIEHSPSATY VKSREGRYLL VNRKHEEVTG LSRAQVLGKT
DAEIFPAAAA EAYRRVDLEV MASGHTVEAE EKLHKGQGEA FFLSVKFPTR NSSNEITGIC
GISTDITPIK HYQKELERLS QFDELTNLFN RRHFFSLAKH ELNRSSRYRS KLSVMMLDID
HFKRINDGHG HKTGDLVLAN IGKQIGDSLR DSDIAGRMGG EEFAILLPET DLEQASIMAE
RLRKQVAETW LDIGDGRTLN CTLSIGLATK SDQQIDLENL LHQADTALYA AKNSGRNKVS
CADRNRPA
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