| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2322 |
|---|
| Symbol | |
|---|
| ID | 3566177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 2502913 |
|---|
| End bp | 2503509 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637680788 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_285528 |
|---|
| Protein GI | 71907941 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
|---|
| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 47 |
|---|
| Plasmid unclonability p-value | 0.0661618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAACG CCCCGCATCA ACCGGCAGTC GCCATTCCCG CCGCACGCCC CGACCATGGG
CGACGAATCC TCGGGTGGGT GGGCGACTTC CTGTGCCATG CCCGCCAGCG CTGGTACCTC
TACCTGCCGA TCGTCGCCAT CTGGAGCCTG GCCTATGTCC GCCTCTTCGT CGACGCGACA
CCGCGCGTGC CGGTCCTTTT CAACTGGACG CCAAGCCTGC CTTATCGCGT TGCCTGGCTG
CAGCACGGCC CGCACCAACT GCAGCGCGGC GACTTCATCG TTTTCTCCTT TGCCGGCGAG
GCGCAGCACC GTTATCCGGG ATTACGCGGT CAACCTTTCT TCAAGATCGT GCGCGGTTTG
CCGGGTGACA CCGTAACCGT CGCCGGCCGG CAAGTGGCCA TCAACGGCCA GGACGTCGGC
GTGGCCAAGA CAAAGGCCTA TGACCTCAGG CCACTCGCGC CGATCGCGCC GACCGTCATC
CCGCCTCGCC ACTACTACGT GCAGGGTACC AGCCCCGACT CCTTCGACTC GCGCTATCAG
GAAAGTGGCC TGGTCCGGGC GGAGCAGGTG ATCGGCGTCG TGGTCCCTCT GTTGTGA
|
|---|
| Protein sequence | MNNAPHQPAV AIPAARPDHG RRILGWVGDF LCHARQRWYL YLPIVAIWSL AYVRLFVDAT
PRVPVLFNWT PSLPYRVAWL QHGPHQLQRG DFIVFSFAGE AQHRYPGLRG QPFFKIVRGL
PGDTVTVAGR QVAINGQDVG VAKTKAYDLR PLAPIAPTVI PPRHYYVQGT SPDSFDSRYQ
ESGLVRAEQV IGVVVPLL
|
|---|
| |