| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1858 |
|---|
| Symbol | |
|---|
| ID | 3569554 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 1998522 |
|---|
| End bp | 1999556 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637680329 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_285074 |
|---|
| Protein GI | 71907487 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 0.000552891 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.630364 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATTC AGCCAACCAC GACCCGCATC AGCCTCGCCC TGCAAGGCGG CGGCGCCCAT
GGCGCCTTCA CCTGGGGCGT ACTCGATGCA CTGCTCGAAC AGGGCGACTT CAGTTTTGAT
GGCATCAGCG GCACCAGCGC CGGAGCCATG AATGCGGTTT GCCTGGCCCA TGGCCTGATG
ACCGGCGGCC GGGATGGGGC CCGCGAAGCG CTTGAACGAT TCTGGCTGGC CATTGCCGAC
TCAGCCTTGT TCCAGACCAA CGGCGATGGC ACGAGCAGCA TGTCTCCCGC CCTGAAAATG
ATGCTGCAAT GGACCAACCA CCTGAGCCCG GAGCAACTCA ATCCCTTCGA CCTCAACCCG
CTGCGCGACA TCGTCGAAGC CCAATTCGAC TTCGCCCGTC TGCGCAAGGC AAGCCCGGTC
AAACTGTTCA TCGCCGCCAC CCATGCCAAC TCCGGCAAGC TGCGCGTCTT CCACAACCAC
GAGATGTCGG CCGATGCCCT GCTCGCCTCG GCCTGCCTGC CAACCATCCA TCGGACCATC
TACATTGATG ACCAGCCCTA CTGGGATGGC GGCTACAGCG CCAATCCGGC CATCTTTCCG
CTGTGCTACC AGTGCGAAAC GCCGGACATC CTGCTCATCC TGCTGACGCC CCTGCGCTAT
ACCGAAACAC CGGATACCGC CGACCAGATC CGCGAACGCC TGCGCGAACT CGCCTTCAAC
TCGACCTTCC TGCGTGAAAT GCGCATGTTC GCCCACCTGC GCGAGCAGAT CAGCCCCAGC
CGCCTGCCGA TCTGGCTGCT CGAACGCCTG CCGGGCACCG CCCTGGAACG ACGCCTGGCC
CGCCTGCGCT TCCATGCCAT CAGCGCCGAG CACTGCCTCG GCGAACTCCC CGCCGACAGC
AAACTCGCCG TCAGCCGCCC CTTCTTCGAA AAACTGCGTG ACGAAGGCCG AGCCCACGCC
AAACGCTGGC TGGAAGGCAA TCGCAATGAA GTCGGCAGAA CCTCGACGCT CGACCTCGGC
AAACTTTTCT ATTGA
|
|---|
| Protein sequence | MPIQPTTTRI SLALQGGGAH GAFTWGVLDA LLEQGDFSFD GISGTSAGAM NAVCLAHGLM
TGGRDGAREA LERFWLAIAD SALFQTNGDG TSSMSPALKM MLQWTNHLSP EQLNPFDLNP
LRDIVEAQFD FARLRKASPV KLFIAATHAN SGKLRVFHNH EMSADALLAS ACLPTIHRTI
YIDDQPYWDG GYSANPAIFP LCYQCETPDI LLILLTPLRY TETPDTADQI RERLRELAFN
STFLREMRMF AHLREQISPS RLPIWLLERL PGTALERRLA RLRFHAISAE HCLGELPADS
KLAVSRPFFE KLRDEGRAHA KRWLEGNRNE VGRTSTLDLG KLFY
|
|---|
| |