| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1279 |
|---|
| Symbol | dinF |
|---|
| ID | 3515236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | + |
|---|
| Start bp | 1542058 |
|---|
| End bp | 1543476 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637669967 |
|---|
| Product | DNA-damage-inducible protein F |
|---|
| Protein accession | YP_264563 |
|---|
| Protein GI | 71065836 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.244391 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCTA CCCTACCGCC AAGTGCGATG CCGCCCATTG ATACTCGTTA TGCGCGTATT
ATCGCTATTG CATTGCCGGT ATTACTGGCA AATCTTGCGA TGCCACTACA AAGCATCATT
GATACGGCAA TTATTGGCAA TATGAATGAC ACGGCAAAAC TTGCTGGTAT CGGGCTTGCA
GTACAACTAC TATCACTATT GCTCGTCAGT TTTAACTTTT TGCAATATGC CTCATCTGGA
CTTTCGGCGC AGGCATTAGG ACAGCAGGCT AATAAAAACA CCGCTCATAG CGACATCCTA
AAAAATAATC AAAGTCAGCA ATCACCGCTG TTATTAATCT TGCAACGCGC TTTGGTTTTG
GCATTTATTA TTGGCACGGT TTTACTACTG GCAAAACCTT GGCTCATTGA TATGGGTCTA
CAAGCGCTCT CCGCCAACCC TAATAGCGGT ATTGCAGCAA AGACTTATTT AGATGTGCGC
TTTTGGGGTG TAATAGCTGA GTTGATGAAC TTTGCTTTTA TTGGCTGGTT TGCAGGTCAA
GGCAAGACCC GTTATATGCT GTATCAACAA GGTTTTATCG CCATAATTAA TATCATTCTG
ACTCTATTTT TTGTCTTTGG AATGAATATG GGCTTGGTCG GTGTTGCGTT GGGTACGGCA
ATAGCTTTTT GGTTAGGTGT GGTATTAGCA TTATGGCTTA GTCGTCAGCA TCTAAAGATA
TCTTGGTGGG CGTTATTTAC CACTGACCCG CAGCATTTTA GCAAGAGTAA GATGCTTAGG
CTATTTTCAT TAAATAAAGA TATTTTTATC CGTACGCTTA TCTTAACGCT AAGCTTTGCT
TGGATTACTC GCCTCTCCGC CCAGAGCGGT GATGTTATAT TGGCGGCCAA TGCTATTTTA
TTACAAGTAT TGAGTATCTC AGCCTTTGCA CTGGACGGGG TGGCAGTCTC TGCTGAGACG
TTAAGCGGAC AAGCAGCAGG TCGACGCGAT TGGTCACGCT TTCGTATTAT TGTTAAACGC
ACCGGCATCG TGAGCTACGG TCTTGCCATC TTGCTAAGTG CGATATGGTG GCTTGCAATG
CCCACATATT TACAGTTTAT GACCAATATC GAATCGGTCT TTACTCTTGC CTACGACTAT
CATCTTTATG CTGTATTACT ACCTCTTGTT GGCGTTGGTG CTTATTGGCT AGATGGGATA
TTTTTTGGTT TAACAGCAGG TAATATTATC CGAAATGCCG CCCTTATATT AGCAGCTATC
TTTTTCCCAC TGAGTTGGTT GCTTTATCAA CAATGGGGTA TGACTGGCAT CTGGCTTAGC
GTATGGTGCT TATTGTTACT AAGAATGCTG ATACTCGCTG GGTTTTTATA CCGTGCTCAT
CAAACAGGCA GCTATGAAAA ACTCCAATTT GACCATTGA
|
|---|
| Protein sequence | MSSTLPPSAM PPIDTRYARI IAIALPVLLA NLAMPLQSII DTAIIGNMND TAKLAGIGLA
VQLLSLLLVS FNFLQYASSG LSAQALGQQA NKNTAHSDIL KNNQSQQSPL LLILQRALVL
AFIIGTVLLL AKPWLIDMGL QALSANPNSG IAAKTYLDVR FWGVIAELMN FAFIGWFAGQ
GKTRYMLYQQ GFIAIINIIL TLFFVFGMNM GLVGVALGTA IAFWLGVVLA LWLSRQHLKI
SWWALFTTDP QHFSKSKMLR LFSLNKDIFI RTLILTLSFA WITRLSAQSG DVILAANAIL
LQVLSISAFA LDGVAVSAET LSGQAAGRRD WSRFRIIVKR TGIVSYGLAI LLSAIWWLAM
PTYLQFMTNI ESVFTLAYDY HLYAVLLPLV GVGAYWLDGI FFGLTAGNII RNAALILAAI
FFPLSWLLYQ QWGMTGIWLS VWCLLLLRML ILAGFLYRAH QTGSYEKLQF DH
|
|---|
| |