| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_0889 |
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| Symbol | |
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| ID | 3514890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | + |
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| Start bp | 1062776 |
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| End bp | 1064563 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637669578 |
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| Product | type II secretion system protein |
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| Protein accession | YP_264176 |
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| Protein GI | 71065449 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.691436 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGCTC AACAGTACTC GATGGTAATT GATTTGCGTT GGTGCCTCGA TGAATTGTTG
GCAGATAAAC TAATCGATCA ACGTGGCTAT AATTTGGTCA TTACTAGCCG CCGCAATAAA
GTGCAGCATC CGCTATTGAC TATTAGTGAG TTTGCTCTGA CAAATGGTCA CGCACTTGAT
AATGATTCTG ATAATAAATT AACGCTGGCA TGGCTCAATC AATGGTTGGC TGCCAAAGCA
GATATGCCAC TTATCCGTAT TGACCCGTTA AAGGTTGATG TGCCGGCGGT GACGCAGCTG
ATGTCGTTTG AGTATGCCCG CTCGCAGCAT ATTTTGCCGA TTGAAGTAAC GCTTGATGAA
GTGGTTATCG GTACCGACCA GCCATTTTAT ACCGACTGGC ACGCTAATAT TGAAAAACTC
ATCAAGTCAA AAAGCTATCG TACGGTATTT ATCAATCCTG AACAGATGAG TCGTTACCGG
CAAGAGTTTT ATCAAGTTAC GCAAGCGATT GCTGGTGCGA ATTCTCTGCA CAAGCGTGCG
GCATCTGATA TTACCAATGT CGAAGCACTA TTGCAGCTAG GCGATAACAC AAATCCTGAT
GCTAATGACC AACACATTGT GAAAGTGGTT GATTGGCTGT TGCAATACGC CTTTGAGCAG
CGTGCCAGTG ACATTCATTT AGAACCACGC CGCGAAACAG GCAAGGTACG TTTTCGTATC
GATGGCGTGC TGCATAGTGT CTATGAAATG CCACTTGCGA TTATAGTGGC GGTGACCGCA
CGTATTAAAA TATTGGGGCG GCTAAATGTG GCAGAAAAAC GTAAGCCGCA GGATGGACGA
TTAAAAACCC GCACACCAAA AGGCTTAGAG ACTGAGCTGC GTCTCTCTAC CATGCCGACA
GCTTTTGGCG AAAAGCTCGT AATGCGAGTA TTTGACCCTG AGGTACTGGT ACGCTCATTT
GCACAGCTTG GTCTATCGGG TAAGCAGCTG GAGACTTGGC ACGAGCTTAC CGCGCATCCA
AATGGCATTA TTTTGGTTAC CGGTCCGACA GGTTCTGGTA AAACCACTAC CTTATATAGT
ACGCTCAAGC AATTGGCGAC TGAGCAGGTC AACGTCTGTA CCATTGAAGA CCCCATTGAA
ATGATTGAGC CAGCATTTAA TCAAATGCAG GTCAATCCAG GGGTTGATTT GCACTTCGCT
GATGGCATTC GCTCTTTAAT GCGCCAAGAC CCTGATATTA TTATGGTCGG TGAGATTCGT
GATGCTGAGA CTGCAAATAT GGCAGTGCAA GCGTCCTTGA CAGGGCATTT GGTACTATCG
ACTCTGCATA CCAATGATGC ACCAAGCTCC ATCACCCGTC TGCATGACCT AGGCATTCAG
CCATTTTTAA CCTCAGCAAC GATATTGGGC ATCATGGCAC AACGTCTATT ACGGACATTA
TGTTCGCATT GCAAACAAGC GGTTGATGTT ACGCCAGATA GTGAGATTGC CATTCAATGG
CAGGAGCTCG TACAGCCGTG GCGCGCGCCC GTGCCAGCGC AAATTTATAA AGCGCAAGGC
TGCGAGTACT GCCGACACAC CGGTTATCAA GGTCGCGTTG GTCTATATGA AATCATGCCA
TTATCCAATG AGCTAAAAAA ACTGGTCGCT GCCGATGCCA ATTTAGAGGC GCTTAAGCAG
CAAGCCTATC GTGAAGGTAT ACAGCCACTG CGTCTATCTG GTGCGAAGCG CATTAGTGAA
GGGGTAACAA CCATGGAAGA GGTCATGCGT GTGGTACCGT TGCATTAA
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| Protein sequence | MPAQQYSMVI DLRWCLDELL ADKLIDQRGY NLVITSRRNK VQHPLLTISE FALTNGHALD
NDSDNKLTLA WLNQWLAAKA DMPLIRIDPL KVDVPAVTQL MSFEYARSQH ILPIEVTLDE
VVIGTDQPFY TDWHANIEKL IKSKSYRTVF INPEQMSRYR QEFYQVTQAI AGANSLHKRA
ASDITNVEAL LQLGDNTNPD ANDQHIVKVV DWLLQYAFEQ RASDIHLEPR RETGKVRFRI
DGVLHSVYEM PLAIIVAVTA RIKILGRLNV AEKRKPQDGR LKTRTPKGLE TELRLSTMPT
AFGEKLVMRV FDPEVLVRSF AQLGLSGKQL ETWHELTAHP NGIILVTGPT GSGKTTTLYS
TLKQLATEQV NVCTIEDPIE MIEPAFNQMQ VNPGVDLHFA DGIRSLMRQD PDIIMVGEIR
DAETANMAVQ ASLTGHLVLS TLHTNDAPSS ITRLHDLGIQ PFLTSATILG IMAQRLLRTL
CSHCKQAVDV TPDSEIAIQW QELVQPWRAP VPAQIYKAQG CEYCRHTGYQ GRVGLYEIMP
LSNELKKLVA ADANLEALKQ QAYREGIQPL RLSGAKRISE GVTTMEEVMR VVPLH
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